HsaINT0135819 @ hg38
Intron Retention
Gene
ENSG00000165661 | QSOX2
Description
quiescin sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr9:136224861-136226874:-
Coord C1 exon
chr9:136226774-136226874
Coord A exon
chr9:136224910-136226773
Coord C2 exon
chr9:136224861-136224909
Length
1864 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
TTCTGTGTTTTTCCTCTTAGTAT
3' ss Score
9.11
Exon sequences
Seq C1 exon
ACTGGGCCAGTGCCATTCGCGTCGCAGCTCTGGACTGCATGGAAGAGAAGAACCAGGCCGTGTGCCATGACTACGACATCCACTTCTACCCCACCTTCCGG
Seq A exon
GTGAGTATCACGCGGCTGCTTGTCCGTTGAAATTCACCTTCTACCCCACCTTCCAGGTGAGCATCACGCGGCTGCTTGTCTGTTGAAATTCGCCACATCATAGTGCCTGTGTTTTCGGCTTCTCTGGCTCTCTCCTTGGAACTTCGTAGGAATTGTAGGAGCTGATGTTTGGTGGGGGCAGCTCTTGTTCCACCCTGTTGTGCTGTGGAAGTGTCTGTGGGACTGTCCACGCTCACACAGACCCGGTCACATGGAGGGGATGCGTGAAAAGACCCCCTGCAGCCTGCACGGCCAGGGGGCGCAAGGAGACCAGGACTGCGAGGGCTGGCACCCCAGCCTGAAGCCACGCGTGTGGTCCGTGTACCATGGGGCTCTCACACATGCACACTCATGCACACACACACGCACACACAGGCACAGGGCCTCTGCCTTCCCCAGCCAAAGTCAGCCCTGCAGACAAGGCTGTGCCCATTGCTCCCACTAGGGGGCGGAGGTACCTGTGACCCTGTTGCAGGCCCGTGCATAGCATGTGTGTACCTGCGGGTGCCACTGCCTCCTGCGTGCCTTGACATGGACATCTCCAGAAACGTGGGCGCCTTGGGCCCACTTCCTGGGAAGCTTTGTCAATTTGAGTAAAACTCCGTCCTTGTCAGCCCTGGTGCCTTGCTGTGTGGTGTGGTGTCATGTCATGGTGGCTTCGCTTGTATTTTGGGGGCTGTTGTTTTCACTGTGCTGGCAGCACCTGTGGTCCTGCCCTAACAGGTGCCACGCTGGGCGGCACCGGTGTCAGCCCTGCCCCAGGGCCTCTCGGGGCCTGTGTCGCACACTTGCTTGCCTGCCTCTGCGTGTGATTACGTCAGCATGGCTTCCTGTTGTATTTTGATTTTGCTTCAGACACAGTTCACACTGTGCTGTATGTAAACTTTCGGGCCCTCTTTCTGTTACTTAATGGGACATTGCCCAGATCCACTACGATGCTCATTGGATGGGATTGTCCAGTGACGTCACTCTGAGAACCAGAGCCCCCCGTTGCCAGGTGTGTGGGCTCTTCCAGGCTTTGGTGGCTTTGAACGGCGCTGCTGTGCGCCTTCCCGGGCAAGGGGAGAGCTGAGGCTGGGAGAGAAGCCACTGGGCCGCGAACCGGGTCTGTGCACAACAGACCTGCAGGGCCAGCAGTGTCAGGCAGTTTTGTGCTCGCCCAGGGACCAGTGCAGCAGGAAGCACTGGCGGCTTCGTTTGCATTTCCCTGGCGGCTGCAGTGCCAGCACATCTGGCTTTGTGGGCCGTGGGTGTCATGGGTGAAGTGTCTTCCTGTCATCTGCACGTTTCCCTCTTAGCTGGCCAGTGCTTTTCTTACCGACCTCATCTCCGCCATCATGTAACCTTGTCTCGTCGCTGTCTCTAACGTACCCTTTGATGAAGAAAGTTTTTAATGTTAACATAAGAACCTAATCATCCACTCAGAGATACTGCGTGGTGTCTCCTCCTCCTGCACATCCTCCGTGTTGTCACAGCTAACGCTACAGCTAACCATTAAGACATAGGCTCACTACCAAGTCCCAGAGAGCGGTGTCTTTTATGATTCCAGCCCAGTTGAACTGTCTTGCTTCTAGCCCTGTTGGGTCAGAAAATGTAAATGATGGGAATGCTGATTGGAGCTAACCTTAGCCCCCTCGTAAATCTGACAGGAAACATTAATATGCACAAAGACAAGGAGAAGCGTGTGGTTTGTCATTAATTTATGAAAACTTTCCGAAGGAAATTGAGTAAAGCTCCCTCTAAGGTGACGGGCGTTTTGTTGCTTAAACACATGCAGATGCCCATGGAAGGCTGCCTCTTACTTGTTCTGTGTTTTTCCTCTTAG
Seq C2 exon
TATTTTAAAGCATTTACAAAGGAGTTTACAACTGGAGAAAATTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165661:ENST00000358701:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.057
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=FE(29.7=100)
A:
NA
C2:
PF0008515=Thioredoxin=FE(14.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development