HsaINT0135819 @ hg19
Intron Retention
Gene
ENSG00000165661 | QSOX2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:30249]
Coordinates
chr9:139116707-139118720:-
Coord C1 exon
chr9:139118620-139118720
Coord A exon
chr9:139116756-139118619
Coord C2 exon
chr9:139116707-139116755
Length
1864 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
TTCTGTGTTTTTCCTCTTAGTAT
3' ss Score
9.11
Exon sequences
Seq C1 exon
ACTGGGCCAGTGCCATTCGCGTCGCAGCTCTGGACTGCATGGAAGAGAAGAACCAGGCCGTGTGCCATGACTACGACATCCACTTCTACCCCACCTTCCGG
Seq A exon
GTGAGTATCACGCGGCTGCTTGTCCGTTGAAATTCACCTTCTACCCCACCTTCCAGGTGAGCATCACGCGGCTGCTTGTCTGTTGAAATTCGCCACATCATAGTGCCTGTGTTTTCGGCTTCTCTGGCTCTCTCCTTGGAACTTCGTAGGAATTGTAGGAGCTGATGTTTGGTGGGGGCAGCTCTTGTTCCACCCTGTTGTGCTGTGGAAGTGTCTGTGGGACTGTCCACGCTCACACAGACCCGGTCACATGGAGGGGATGCGTGAAAAGACCCCCTGCAGCCTGCACGGCCAGGGGGCGCAAGGAGACCAGGACTGCGAGGGCTGGCACCCCAGCCTGAAGCCACGCGTGTGGTCCGTGTACCATGGGGCTCTCACACATGCACACTCATGCACACACACACGCACACACAGGCACAGGGCCTCTGCCTTCCCCAGCCAAAGTCAGCCCTGCAGACAAGGCTGTGCCCATTGCTCCCACTAGGGGGCGGAGGTACCTGTGACCCTGTTGCAGGCCCGTGCATAGCATGTGTGTACCTGCGGGTGCCACTGCCTCCTGCGTGCCTTGACATGGACATCTCCAGAAACGTGGGCGCCTTGGGCCCACTTCCTGGGAAGCTTTGTCAATTTGAGTAAAACTCCGTCCTTGTCAGCCCTGGTGCCTTGCTGTGTGGTGTGGTGTCATGTCATGGTGGCTTCGCTTGTATTTTGGGGGCTGTTGTTTTCACTGTGCTGGCAGCACCTGTGGTCCTGCCCTAACAGGTGCCACGCTGGGCGGCACCGGTGTCAGCCCTGCCCCAGGGCCTCTCGGGGCCTGTGTCGCACACTTGCTTGCCTGCCTCTGCGTGTGATTACGTCAGCATGGCTTCCTGTTGTATTTTGATTTTGCTTCAGACACAGTTCACACTGTGCTGTATGTAAACTTTCGGGCCCTCTTTCTGTTACTTAATGGGACATTGCCCAGATCCACTACGATGCTCATTGGATGGGATTGTCCAGTGACGTCACTCTGAGAACCAGAGCCCCCCGTTGCCAGGTGTGTGGGCTCTTCCAGGCTTTGGTGGCTTTGAACGGCGCTGCTGTGCGCCTTCCCGGGCAAGGGGAGAGCTGAGGCTGGGAGAGAAGCCACTGGGCCGCGAACCGGGTCTGTGCACAACAGACCTGCAGGGCCAGCAGTGTCAGGCAGTTTTGTGCTCGCCCAGGGACCAGTGCAGCAGGAAGCACTGGCGGCTTCGTTTGCATTTCCCTGGCGGCTGCAGTGCCAGCACATCTGGCTTTGTGGGCCGTGGGTGTCATGGGTGAAGTGTCTTCCTGTCATCTGCACGTTTCCCTCTTAGCTGGCCAGTGCTTTTCTTACCGACCTCATCTCCGCCATCATGTAACCTTGTCTCGTCGCTGTCTCTAACGTACCCTTTGATGAAGAAAGTTTTTAATGTTAACATAAGAACCTAATCATCCACTCAGAGATACTGCGTGGTGTCTCCTCCTCCTGCACATCCTCCGTGTTGTCACAGCTAACGCTACAGCTAACCATTAAGACATAGGCTCACTACCAAGTCCCAGAGAGCGGTGTCTTTTATGATTCCAGCCCAGTTGAACTGTCTTGCTTCTAGCCCTGTTGGGTCAGAAAATGTAAATGATGGGAATGCTGATTGGAGCTAACCTTAGCCCCCTCGTAAATCTGACAGGAAACATTAATATGCACAAAGACAAGGAGAAGCGTGTGGTTTGTCATTAATTTATGAAAACTTTCCGAAGGAAATTGAGTAAAGCTCCCTCTAAGGTGACGGGCGTTTTGTTGCTTAAACACATGCAGATGCCCATGGAAGGCTGCCTCTTACTTGTTCTGTGTTTTTCCTCTTAG
Seq C2 exon
TATTTTAAAGCATTTACAAAGGAGTTTACAACTGGAGAAAATTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165661-QSOX2:NM_181701:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.113
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=FE(29.7=100)
A:
NA
C2:
PF0008515=Thioredoxin=FE(14.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)