RnoINT0121285 @ rn6
Intron Retention
Gene
ENSRNOG00000018574 | Qsox2
Description
quiescin sulfhydryl oxidase 2 [Source:RGD Symbol;Acc:1584720]
Coordinates
chr3:3679048-3681345:-
Coord C1 exon
chr3:3681245-3681345
Coord A exon
chr3:3679097-3681244
Coord C2 exon
chr3:3679048-3679096
Length
2148 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
TTTTGTGTTTTTTCCTTTAGTAT
3' ss Score
10.3
Exon sequences
Seq C1 exon
ACTGGGCTGCTGCCATCCGTGTCGCTGCTCTGGACTGTGCAGAAGAAAAGAACCAGGACGTGTGCCGCACATATGACATCCACTTCTACCCCACCTTCAGG
Seq A exon
GTGAGCCCCCAGCAACCTCGACCCCTGCTGCAGTCCTACCTTTTTCACAGGGGGCTTTTAAGGCAGGATCCATGTACCAGTAACTCCTAGGTTAGCATTTCTGTCTGGAAGTCTGAAGATTGTAGGGATTTGCATTTCCAGCACATTGCCAGTTTGTTTCTCATCTTGGGTTACAGAAAGCTCTGATCAGGGGTGGGTACTGTATGAAGCCCTGCTTACACAGAAGCCTGCTGGGTACATATCTTTGTGGGGTACCATGCTGCTGGGTCTACCGTTACTGGAAGAAGGGAGGCACTGGCAGCTCGAATTGGCTCTTCCGTACCCTGCTGCCTGGGCTGCAGTTGGCTCTGCTGACAGACTTGTACGTATTTCTTCCACTAGGGGGCAGAGGTACTACCTGAGGCACTGCTGCAGGTCCGCAGTTCAGTGTGTGCACGAATGTGCACCCACGTGCTTGCATTTGAACATCTCACGCTCACGGGCATCTCCAGGATTATGTAGCGCCTTTGACACTTTCTCTTCCTCCTCATCTTTCTTTCCTTTTCTTCCTCCTCCTTCTTGCTCTCCTCCTCCTCTTCTTCATCCTCTTCCTCCTATTCCCCATCTTATTCTTCCTCCTCTTCCTCCTTGTCCCCCCTCCTCCTCCTTCATCCTCCTCCTTCTCCTCCTCTTCCTCATCCTCCTCTCTTTTTTTCTTTTTTTTAGACAAGGTTTCTCTGCATACCCCTGGCTATCCTGTAACTCACCTTATAGACTAGGCTGACCTAGAGCTCAGAGACCTGCCTGCCTCTGGCTCCTGAGTACTGGGATTAAAGGTGTGTGCCACCACGGCCTAACTTGGAGTTAATTTCTGAAGAGCCTGTGACTGCAGTTCTGCACCTCTATTCTGTTAACACTGAGCATCCTCAGGGCAGCACCCCCGCCCCCAGCACAGTTTCTCCCCACCCATCTATTGGCTGAGCTTTGGTACTGGATGCTCAGTGTGGTGCCAGCCCCAGGGACCTCACAGGTCCTTGTTGCTTGTTTTCTTGCTTTCTGGCCTTGGGCTGATAGTGTCATGTGTATTTCTGTTTTCCATTAAACTGTTGTATGTAAATGCCTAGGCCTTCTTTCTTATACTTCATATGTCTCTGCCAAAATTTGCCCATGATGCTGGGTACTGCTGTGGCTCATTGGGTTTAGCTGTGCAAAAACTCTCTCATGTGATAACCCTCTCTGCTGAGTGTTGAACTATCTCCTGGCTCTTATTACATGGACTAACATTGCTGTAAGGGTCCTCTCGACTTGTGACAAGTCTCCCCGGCTGAGTCTAGGAAGAAGGCCAGAGGACCCTGTGGAGCCCTCTCACAACATGACACATCTGTCCGTCCATGGTGCAGGGCAAAGGGCCTGTGCTCCCTGTTTTCCTGGTGACAAGCACATCTGCTTTTTTTTTTTAAGATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATATGAGCACACTGTAGCTGTCGTCAGACACACCAGAGGAGGGCATCGGATCCCATTAAAGATGGTTGTGAGCCACCATGTGGTTGTTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCGGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCACATCTGCTTTTTTATTCTTGTGGGACTGCTAAGGTATCTGTCCACTTTCTTCTCGACTGCTTCTGCTTCCCTCTCAGAAATATAGGAAGTCCTGAATATCTCACTCAGTACTGGCTTCCTTTGGCCTATGTTGGGAATATTCCCTATCCTTAACTATTATTGATGTGCTTCTGATGGAGCAGCTCTGGTCAGCTCGTCCTTGGAACCTGTGCCGTCAAACTTCAAGGGACACCACCTTTGTAAGGCTCCTGCCCTAGTGCGTTGTCTTACTTCTGACCCTGTTGGGTTAGATGTGACATAATGGAACCCGGTTGGTGCTTAGCACAGCTGCAGGAATATTCATGCCCATAGAGACGTGGAACTCGTTTTGTCCAGTCAGTGCAACGTTGGGAGGGACATGATCAGAGCTTCTGGTTGAGACAACAGTCATCTCATTTACATATTAAACATATGCACAGCTCCCTCCCCTACGTTCACTCTTATTTGTTTTGTGTTTTTTCCTTTAG
Seq C2 exon
TATTTTAGAGCATTTACAAAGGAGTTTACAACTGGAGAAAATTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018574:ENSRNOT00000061735:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=FE(30.0=100)
A:
NA
C2:
PF0008515=Thioredoxin=FE(14.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]