BtaINT0121652 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012784 | RACGAP1
Description
Rac GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:9804]
Coordinates
chr5:30055224-30055605:+
Coord C1 exon
chr5:30055224-30055319
Coord A exon
chr5:30055320-30055406
Coord C2 exon
chr5:30055407-30055605
Length
87 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
AAGTGTCATCTTGATAACAGACA
3' ss Score
2.25
Exon sequences
Seq C1 exon
GGAATGCTGGCAGATTATGTGTCCCAGACTTCTCCAATGATCCCGTCAATTGTTGTCCACTGTGTAAATGAGATTGAGCAAAGAGGGCTGACCGAG
Seq A exon
GTAAGAGTCCACCCTTGGAGAGGGTGAATTTGTTATTTGCATCAGTAGTTAAGAGGTTTTTAACTGAAAGTGTCATCTTGATAACAG
Seq C2 exon
ACAGGCCTGTATCGGATCTCAGGCTGTGACCGGACAGTGAAAGAGCTAAAAGAGAAATTCCTCAGAGTGAAAACTGTACCTCTCCTCAGCAAAGTGGATGACATCCATGCTATCTGTAGCCTCCTGAAAGACTTCCTTCGAAACCTCAAAGAACCGCTTCTGACCTTTCGGCTAAACAAGACGTTTATGGATGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012784:ENSBTAT00000016988:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PU(11.3=53.1)
A:
NA
C2:
PF0062022=RhoGAP=FE(43.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGAGCAAAGAGGGCTGACC
R:
AGCGGTTCTTTGAGGTTTCGA
Band lengths:
182-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]