RnoINT0123515 @ rn6
Intron Retention
Gene
ENSRNOG00000049033 | Racgap1
Description
Rac GTPase-activating protein 1 [Source:RGD Symbol;Acc:1305912]
Coordinates
chr7:141283251-141283628:-
Coord C1 exon
chr7:141283533-141283628
Coord A exon
chr7:141283450-141283532
Coord C2 exon
chr7:141283251-141283449
Length
83 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TAAGTGTCATCTTTTAATAGGCA
3' ss Score
6.55
Exon sequences
Seq C1 exon
GGAATGCTGGCAGATTTTGTGTCGCAGACTTCCCCAATGATTCCTGCTATTGTTGTCAGCTGTGTGAATGAGATTGAGCAGCGAGGCCTGACTGAG
Seq A exon
GTGAGAGGAAACCATGCACAGGGAGAGTTTGTTATCTGTAATAGTAATTTGGAAGTCCCTGAATAAGTGTCATCTTTTAATAG
Seq C2 exon
GCAGGCTTATACAGGATCTCAGGCTGTGACCGGACAGTAAAGGAGCTGAAAGAGAAATTCCTTAAAGTGAAAACCGTGCCCCTCCTCAGCAAAGTGGACGACATCCATGCCATCTGCAGCCTCCTGAAAGACTTCCTTCGAAACCTCAAGGAACCCCTTCTGACCTTTTGGCTAAGCAAAGCGTTCATGGAGGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049033:ENSRNOT00000071885:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PU(11.3=53.1)
A:
NA
C2:
PF0062022=RhoGAP=FE(43.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGATTTTGTGTCGCAGA
R:
GAGGGGCACGGTTTTCACTTT
Band lengths:
173-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]