DreINT0123825 @ danRer10
Intron Retention
Gene
ENSDARG00000015460 | racgap1
Description
Rac GTPase activating protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1917]
Coordinates
chr23:33837381-33839570:-
Coord C1 exon
chr23:33839475-33839570
Coord A exon
chr23:33837580-33839474
Coord C2 exon
chr23:33837381-33837579
Length
1895 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CGCACATATTGCTTTGTCAGACT
3' ss Score
3.87
Exon sequences
Seq C1 exon
GGTACACTAGCAAACTACGTGTCTAACACCTCTCCCATGATCCCTTCGCTAGTGGTGCACTGCATTAATGAGATTGAGCAGAGAGGCCTACATGAG
Seq A exon
GTGAGTTTATAAAGGTCTTTAATTAAGGGTTTATGGGTTTTACCTGTTTATTTACATGACAATAATGATTTCGGGGTTAAAAACAAAATCTAAAACAGGTTATAAAGGGGAATTTTTTGAAGATAATATGAAAACTCAAATGTCATTTGCGCATGCATAATACATTTTTAAGGAGGTGTAGATTAAACCGGGTGTCCTCGGATCCTTAAAGTCTTAAATTCTATAGTATAAAAATAAGGCCTTAATTAGCCTTAAAATTGATTAAATCTGCATTTCAAAGGTCCTAAAAGGACAATCGAACCGACACCATAAAGAAGTTTTTGTTTTCATTTTGAAATCTACTTAACTCTCTTTGTTTATCATCATGCATCACAACATGCGTATCTTTGGCGATACCCAATAAAATGCTCGCTTACAGGGATTTTGTTTAGATGCTTAACGTTCGCTGAGATTTTGCTCGCATAAACAGTTCCTGTGAGTTTTGCTCTATAACAGCTAAAGTGTGTCCAGCTGTGTTGTCATTAGCTATGTGTCCATCCAAAAATGCGAATAAAATGTATGCGCAAAGCTAGATTATTGCAAACAGACGTGCGAATAAAGCAGCGTTTCCATCCAATGAGTCACAGCCAAATCATCAACACAGAAAACAGAATTTGCTGCGATAGGAGATGCTGCGTGAATCTTTTCTTCATTTAATAAATGCGCCTCAGAAGACATTGCAGACAAGCAGTGAACACACGTGGTGTTTGAAGGTGCAAGACACTGAGCACAGACGCTCTTGATTCTGAAGTTCATTAATAATAAAATAACACTAATACTGAAATAGTTAAGGCATTTTAGAATGCCCAGAGCAACATTTCAGATGTTTTTCAATGTGGTCAGCCTGCTGGTTTGTCTATTCGTGCACTTATTTGTATTTTCTATTCGTATTTTTATCACATAATCTCTTATAACAAAACCACATGACCTTTTTTAATGCGCATCTTTTCTTATATATTAGCCAGTTTATCCTACTCTGTTATGTGCACATGATTTTTATGTGCATTTTGTAAATGTATGCACATCTTGGCATCCATCAACCATATTTTTATGTGCATATCCAAAATGTGTATAAAAATAGGTGGGTGGAAACGTAGCTCGAGATGTCAGCAGGCACTCACAGTCGCATTTAACGTGTCGCATATCTAATTGTCTCGTGTGCACATGAAAGCGTGGCCCTCACGCAGGTGGGCATGCGCGAATGTTGGATTTGCGTGAACAGAGATGCACAAAAGCCCAAATCTGCATTTGTTGACAAAAAAGTTTGAGCTGAATTATGGGAGATGTCGGCCCGAAAATATCTTATTTATATTTTATTTATTTATTTATATTTTAGAGTTTTATGTCTCATCCAGAATATATAAATACATATAATTTAGCATTTAGATCATTTAGTTTTTATCATTACTATTGGACAGTGAAGAGAGTTTCAACCAGTACAACAAAAAAATGTTTCTGAAGACAATCACCTACTGCACCTTTAAATAAAACTCTTAGAAAGCTCAGATACCCGGTTAAAGGTGGTCATGATCAAACGCAAAACAATGTCAGAATACAGTATTGTTGTTGTTGTTGAAGTGTTTGCTATCACTTCATCAGTAAAATGTGAACCAATAGCAAAGACACGTCATACACACAGCAGATTTTACATGCACTGCCGCCAACAGACACTGTTTACTAACAAGATGACTGTGCCAAATCTTGGCCTGGCTTTCGTAATGTAATGTTTTTGGCCATTTTCCTTTATGTAAACATAAATCATTTTAAAAACAGTGTGTAAACATGTAACTTGTTATGTTGTAAACATACCCTAACTCTTGAGCACTACCTATAATACGCACATATTGCTTTGTCAG
Seq C2 exon
ACTGGTTTGTACCGGGTATCTGGCTCTGATCGAGTGGTCAAGGACCTGAAAGAAAAGTTCCTGCGTGGGAAGACTGTTCCCCTGCTCAGCAAGGTGGAAGACATCCATGCTATCACTGGCCTCCTCAAGGACTTCCTAAGGAACCTCAAAGAGCCCCTGCTAACCTTCCGCCTCAATCGGGCATTCATGGATGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015460:ENSDART00000027959:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PU(11.3=53.1)
A:
NA
C2:
PF0062022=RhoGAP=FE(43.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACACTAGCAAACTACGTGTCT
R:
CTGCAGCATCCATGAATGCCC
Band lengths:
295-2190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]