GgaINT1023214 @ galGal4
Intron Retention
Gene
ENSGALG00000006271 | RACGAP1
Description
Rac GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:9804]
Coordinates
chrLGE22C19W28_E50C23:340317-340841:+
Coord C1 exon
chrLGE22C19W28_E50C23:340317-340412
Coord A exon
chrLGE22C19W28_E50C23:340413-340642
Coord C2 exon
chrLGE22C19W28_E50C23:340643-340841
Length
230 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
3' ss Seq
GCAATGCTTTCTGCCAACAGAAG
3' ss Score
5.99
Exon sequences
Seq C1 exon
GGTACGTTAATGGACTTTGTCCCTTCTGCTCCTCCAATGATCCCTTCCATCATAGTACACTGTGTTAACGAGATTGAGCAGCGCGGCCTACATGAG
Seq A exon
GTAAAAATGAGGGGTGGGGCAGTGCTGATGAAATGGCTTGGGGTGTTAGGGGAGCAAATAGTCAACCTAAATGTCTCTTGTTAATGATGTGTACAGCACTGCTCAGTGGGAGACTGTGAGCAGCAGTGGCTGTGCAGAGTGCTCAGGTGTGGAGAGAAAGTGGGAGCAGAAGAACATAGACTTTATGTGCAGTTGATATTCTGCTTCTAAGCAATGCTTTCTGCCAACAG
Seq C2 exon
AAGGGCCTTTACCGGATATCTGGCTGTGACAAGACAGTGAGAGAACTGAAAGAGAAGTTTCTCAGATCAAAAAATATTCCTTCGCTCAGTAATGTGGATGATATCCACGCCATCTGCGGTCTCCTGAAAGACTTTCTACGCAACCTGAAAGAGCCCCTTCTCACTTTTCGGTTAAACAAGACTTTTATGGAAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006271:ENSGALT00000010135:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PU(11.3=53.1)
A:
NA
C2:
PF0062022=RhoGAP=FE(43.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTTTGTCCCTTCTGCTCC
R:
CTGCAGCTTCCATAAAAGTCTTGT
Band lengths:
284-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]