BtaINT0122015 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004194 | RALGDS
Description
Bos taurus ral guanine nucleotide dissociation stimulator (RALGDS), mRNA. [Source:RefSeq mRNA;Acc:NM_001101978]
Coordinates
chr11:103130251-103130813:-
Coord C1 exon
chr11:103130718-103130813
Coord A exon
chr11:103130453-103130717
Coord C2 exon
chr11:103130251-103130452
Length
265 bp
Sequences
Splice sites
5' ss Seq
CGAGTGAGT
5' ss Score
8.49
3' ss Seq
AAGCTAGCTGTTCTGTGCAGCCG
3' ss Score
1.49
Exon sequences
Seq C1 exon
CTACACATTGTCATGCGAGCTGGAGCCCCCCTCCGAGTCGGCCAGCAACACCCTCAAGGTGAAGAAGAACACGGCCATCGTCAAGCGCTGGAGCGA
Seq A exon
GTGAGTGCCCAGGTGGTGGGGGAAGGCTCCCTCGGGGTGAGGGAGGCTTCGAGGGGAGATCCAGACAGCTGGCACTGGGGTCCCAGCTCCTTCACTTGCAGCCCTGGGATGGGCATCTGCCTCACTTCTCTCGGCCTCAGTTTTTGCCTCTGTGAAGTGGGTTGATGCTAAATGATCTGTTGGAGGCTGGAGCCCATGGGGTGATTGCCTGAGCACCCGGCACAGAAGCTAGGGGACAGGGCAGTAAGCTAGCTGTTCTGTGCAG
Seq C2 exon
CCGCCAGGCCCCCAGCACAGAGCTCAGTACCAGCGGCAGCTGCCACTCCAAGTCCTGTGACCAACTCAGGTACGGCCCCTACCTCAGCAGCGGAGACATTGCTGACGCACTCAGCGTCCACTCGGCCGGCTCCTCTAGCTCCGACGTGGAGGAGATCAACATGAGCTTCGTCCCAGAGTCCCCCGACGGCCAGGAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004194:ENSBTAT00000032653:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.212 A=NA C2=0.397
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTGTCATGCGAGCTGGAG
R:
CTTCTTCTCCTGGCCGTCGG
Band lengths:
294-559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development