MmuINT0131346 @ mm10
Intron Retention
Gene
ENSMUSG00000026821 | Ralgds
Description
ral guanine nucleotide dissociation stimulator [Source:MGI Symbol;Acc:MGI:107485]
Coordinates
chr2:28548670-28549156:+
Coord C1 exon
chr2:28548670-28548765
Coord A exon
chr2:28548766-28548954
Coord C2 exon
chr2:28548955-28549156
Length
189 bp
Sequences
Splice sites
5' ss Seq
CGAGTAAGT
5' ss Score
10.15
3' ss Seq
AAGCCAAGTGTTTCCTGTAGCCG
3' ss Score
1.23
Exon sequences
Seq C1 exon
CTACACCCTGTCGTGTGAGCTGGAGCCCCCGTCTGAGTCGGCCAGCAACACCCTGAGGAGCAAGAAAAGCACAGCCATTGTCAAGCGCTGGAGCGA
Seq A exon
GTAAGTGCTGGGGCCTAATCCTAACACCCATCAGCCCTTCACAGAGTGAGCTGAGTCAGCGATCTGGGCCTCAGTTTTCACCTCTATGAGATGGGATGGCCCCTCAGATATCCAGGGAAACAGAACTGAGCGCAGTCAAGGTTGGCACCCCTGGGAAGACCCTGAGAGTAAGCCAAGTGTTTCCTGTAG
Seq C2 exon
CCGCCAGGCTCCCAGCACGGAGCTCAGCACCAGTAGCAGTGCCCACTCCAAGTCCTGTGACCAGCTTCGGTGCAGCCCTTACCTCGGCAGCGGGGACATCACCGACGCGCTCAGTGTGCACTCAGCTGGCTCTTCCAGCTCTGATGTGGAGGAGATCAACATGAGCTTCGTCCCAGAGTCTCCTGATGGCCAGGAAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026821:ENSMUST00000028170:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=NA C2=0.510
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACACCCTGTCGTGTGAGCT
R:
CTCCTCCACATCAGAGCTGGA
Band lengths:
250-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types