RnoINT0123933 @ rn6
Intron Retention
Gene
ENSRNOG00000010219 | Ralgds
Description
ral guanine nucleotide dissociation stimulator [Source:RGD Symbol;Acc:3533]
Coordinates
chr3:7125799-7126299:+
Coord C1 exon
chr3:7125799-7125894
Coord A exon
chr3:7125895-7126097
Coord C2 exon
chr3:7126098-7126299
Length
203 bp
Sequences
Splice sites
5' ss Seq
CGAGTATGT
5' ss Score
6.61
3' ss Seq
AAGCCAGCTTCTTCCTGCAGCCG
3' ss Score
4.53
Exon sequences
Seq C1 exon
CTACAACCTGTCGTGTGAGCTGGAGCCCCCGTCTGAGTCAGCCAGCAACACCCTGAGGAGCAAGAAAAGCACAGCTATCGTCAAGCGCTGGAGCGA
Seq A exon
GTATGTGTTGGGCCCTACCCTAGCACCCACCAGCCAGCCATGGAGGGAGCTGAATCAGCAGTCTGGGCCTTGGTTTTCACCTCTGTGAGATGGGGTGATCCCTCAGATATCCAGGGAAGGCAGGACTGGTGGGCTGGAACTGAGAGCAGTGAGGGTCGGCATCCCTGGGAAGACCCCTAGAGTAAGCCAGCTTCTTCCTGCAG
Seq C2 exon
CCGCCAGGCTCCCAGCACGGAGCTCAGCACCAGTAGCAGTGCACACTCCAAGTCATGTGACCAGCTCCGGTGCAGCCCCTACCTCAGCAGCGGGGACATCACGGACGCACTCAGTGTGCACTCAGCTGGTTCATCCAGCTCTGACGTGGAGGAGATCAACATGAGCTTTGTTCCAGAGTCTCCTGATGGCCAGGAAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010219:ENSRNOT00000013809:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.331 A=0.000 C2=0.450
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAACCTGTCGTGTGAGCTG
R:
GGCCATCAGGAGACTCTGGAA
Band lengths:
286-489
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]