GgaINT0125407 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:7451174-7451576:-
Coord C1 exon
chr17:7451481-7451576
Coord A exon
chr17:7451376-7451480
Coord C2 exon
chr17:7451174-7451375
Length
105 bp
Sequences
Splice sites
5' ss Seq
CGAGTGAGT
5' ss Score
8.49
3' ss Seq
CCTCCCCTATCTCCCTGCAGCCG
3' ss Score
12.03
Exon sequences
Seq C1 exon
CTATGGGCTGTCATGCGAGATTGAGCCACTGTCTGAGTCAGCCAGCAACACGCTGAAGGCGAAGAAGAACACGGGAATCATCAAGCGGTGGAGCGA
Seq A exon
GTGAGTCTGTTTGTCCCAGTGGGATGTGGGTTGGAGATGAGGGTCAGTGCCATCGTGCCCTTCCTTGAGCCCGCTCTCTCCTCACCCTCCCCTATCTCCCTGCAG
Seq C2 exon
CCGGCAGCCAGCCAGCACCGAGCCCTGTGCCAGCGGCAGTTCCCACTCCAAGTCCTTCGACCAGCTCAAGTGCGGGCAGTACCTGTGCAGTGGGGATGCCACTGACTCAGTCAGCGTCACCTCCGCCGGCTCCAGCAGCTCCGACGTGGAGGAGATCAACATCAGCTTCATCCCTGAGTCCCCCGACTGCCAGGAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003412:ENSGALT00000005397:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.176
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCTGAGTCAGCCAGCAAC
R:
GGGACTCAGGGATGAAGCTGA
Band lengths:
250-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]