BtaINT0122050 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010718 | RALGPS2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:HGNC Symbol;Acc:HGNC:30279]
Coordinates
chr16:61700773-61704394:+
Coord C1 exon
chr16:61700773-61700827
Coord A exon
chr16:61700828-61704316
Coord C2 exon
chr16:61704317-61704394
Length
3489 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTTATAATGGAATCCAACAGGAA
3' ss Score
4.24
Exon sequences
Seq C1 exon
GTAGCAGTGATGGCTCTGAACTAAGTGAAGAGACCTCATGGCCTGCTTTTGAAAG
Seq A exon
GTAAGAAAAATTGTCCATTTAAACTGTTTTGAGTTTATTTTGTCCAAGTATATGATGTTTCCCATCATATACTTCATTGGTTCATTGGTAAAGAATCCGCCTGCCAATGCCGGAGATGTGGGTTCAATCCCTGGGTTGGGAAAATCCCCTGGAGAGGGATATGGCAACCCACTCCGGTATCCTTGCCTGGGAAATCCCACGGAGAGAGAGCCTGCCGGGCTACAGTCAACGGGCTCTCAAAAGAGTCGGACACAACTTGGGGACTAAACAACAACAACAAAGTATATGATAATCTGAATTTTAAGACATAATATTTATTACATATAAAAGGACTATTTAGGCTTCCTGCTGGTGGCAGAAATTAAAAGTTAATACTTAAGCCTAGAATTCAGTATTATCTCGTAAAGACATTGTATTTGGTGACTTGACACATATATTTGATTTTTAGTACATTTTAAATTGTAACTTAAAATTAATAATAATCAGGGCTTCCCTGGTGGCCCAGTGGTAAAGAATCTGCCTGCCAATGCAGGTGACACAGGTTAGATCTCTGATCCGGAAGGATCCCACATGCCTCAGAGTAACTAAGCCTGTGCATTACAACTGCTGAGCCTGTGCTCTGGAGTCTGGTAGCCACAACTACTGAAGCCCACACACTCTAGAACCTAGTGCTCCACAGCCAGAGCAGTCACCACAATGAGAAGCCTGCGTACTGCAGCTGGAAAGGTGGCCCCCACTGTCCGCAGCTAGAGAAAAGCCTGCACAGCAACAAAGACCCAGCAGAGCCAAAAATAAATTTTTTAAAAAATAAGTAAAATATGAAAAAAATGACTTAAAAAAATAATAACCAATCATAGCTTACCTACTTTGATGTACAAAAGTAAAATCTTTTCCTTAAATTCTGGTTTATTTAAGTAATTTTAAGGTATTTAGTGAAATGATCAATTTCATTCTCTGCTAATTTATACATTTTAAATTATACTCTAAATAAGTAGATGAAAGTTTGAATTTAAATTGTTATTTATTAAAAGGTTCCACAAAGCACACAGACACATACTTAAATAATGTAAGTCATATTCTATTCTCTTTTCCTTGATGCTTTAATCTATAAAAGCTGTCATCTGCTTGCAGCAAATATGCTGTGTTGATCTTTCAGTATAAGATTTTTCTAAAAATGTAGGCAAGTAGAACAAATAATTGTTATTTAATAAATATCCATTAGAATTTTGCTGTCTTTGATCATTTTAGTTCTGCCATTGTCATACTAAAATATTTGAACCTTGAGCAAAATAATTGCTCCTATTGTGTATATACTAAGCAATAAGTTTCTGAGCAATCAGATTAGGTTGAATTTTGAATGTCATATTAAACTTGATGAAGTTGAAAATATTTAGTTACCTAACTCCTGCCAGTCACTTTTTTTAAAATATAGATTTATTTATTTTAATTGTAGGCTAATTACTTTACAATATTGTATTGCTTTTGCCATACATCGACATGAATCCATCACGGGTGTACACGTGTTCCCCATCCTGAACCCCCCTCCCACCTCCCTCCCCTTACCATCCCTCTGGGTCATCCCAGTGCACCAGCCCCAAGCATCCTGTATCATGCATCGAACCTGGACTGGCAATTCATTTCATATATGATATTATACATGTTTCAATGCCATTCTCCCAAATCATCCCACTCTCTCGCTCTCCCACAGAGTCCAAAAGACTGTTCTATACATCTGTATCTCTTTTGCTGTCTTGCTCACTTTTTAATAGAAGCAATTATACTCACTATACATCTGAAATTGAACTATACGTATTTGAATTGGTCAATTTCATGGTGTTATTGGAAAATTAGGTCCCTGGAGAAGGAAATGGCAACCCACTCCAGTACTCTTGCCTGGAAAATCCCATCAGAGGAGCCTCATAGGCTACAGTCCATGGGGTCACAAAGAGTCAGACACGACTGAGTGACGACACACATTTGTTCTTGAAGCTTCGTGAAGATTCTCACCATGGTGATTAAGACTTTACTTGCATATCCAATATTTCAAAATACTTTTGAGCACTTCTAATTATCAGTGTTCTTAAGTTTTATTCTCTTTGTTTTGGGAAATTTTTAACAATTTGTTTTTACATATTATTTCTCTTCCAAGTTTTTATTTCAGTCTCTTTATTTGAGTTTGCCTGAAACAGGAAGATCACAAGAGTTGCCTCTGGCATTCTGTCTGTACAAATTGTTTTATTAGTTGTCTCCCTCTAGTAAGAACATGGTATCATCAGAAGTAGATTATAGTATATTGTATTTAAATAAAAAATATTGATGAACAAAATTGTTTATCATGTGGCATGAGAAGTAATCAAGTAACCAGAATGGTGTTGTGTTAAATAATCTGTTCTTATTCCACCAGGTTACTTAAGGAAGATGGTATTTAAGTGTTAACCTTCACATCTCAAAATAGTATTTTTCTTTTGACAAATGTTTTGCTTTGCAGACATTTGCAGCCAAAAATATCTACTGTGCTTTTGCCAAGTTTAAATCAGTGGCTCTTTTGAACACTTTGAAATCAAATCAGTGCTGCCCAGCAAGATTCAAACATGAAATATTAAAAAGTGAATAAAGAATTGGGATTTAAAATACTGTTGTACTTGTGGATAATGAATTTTGAAAATAGACATCAAATATTTTGCCACTTAAGTTGCTAAAATAAAACTTTTTGTTTTAAATATCATTTATCAACAGTGCTGCTTTGGGCTTTTTCTAGGCAAAGAAATATCAGTGTTTCTGTGTGTATGTGTTTATTTCCTTTTTTAAGTATCACATGCTATTTTGGATGAAAATTAACTCATACCATTTTTTTTTAATCATTTACTGGCTTTCTCATGCATTGTAGTTGATGTGAAAATAAAATAAAGCCTCTATTTTTGTTCAGTTTATCTATTTTAGTAGTTTTTTTTTTTTAGATTTAATATATAAAAGAAAAGAAAAGAAGATGTTTAGATCACATTAATTTTAAGTTTTTAGATCACATTGCTTTTAGGTATCTTCATAGGGACATATAATAAAAAATTATTATTCTATAAATCCAGGTACCATATATAAAGTGGAATCTAAGAACTAGAATATAAATAAAAGGATTTCAGGCTTTGTTTGGATATAAATACTTCTTTATTTTAGTAAATTTGTGAAAATGAATGTGTATATAAATACATGGTTTAAGAAGCAACCTCAAGTATTTATAGTCAATGGTAGAAGAAAATAATAATTTAAAATCTGTGCTGCATGCTTTTTAAAAAAAAAAAGGAGCAATCATATACTATCCTTTTGTAGGATTTAGAAAGCTGTATTACACGAAGAAATTATTATGAAAGCTGTATTACACAAAGAAATTATTATGAAAGCTGTATTACACAAAAATTATTATACTGTTCTAGGTTATTGATGATGACTATGTAAATAAAAGTAATATATGCAATTTATAATGGAATCCAACAG
Seq C2 exon
GAACAGATTATACCATTCTCTCGGCCCGGTGACAAGAGTGGCACGAAATGGCTATCGAAGCCACATGAAGGCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010718:ENSBTAT00000034000:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.474 A=NA C2=0.222
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development