MmuINT0131381 @ mm9
Intron Retention
Gene
ENSMUSG00000026594 | Ralgps2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:MGI Symbol;Acc:MGI:1925505]
Coordinates
chr1:158751518-158754176:-
Coord C1 exon
chr1:158754122-158754176
Coord A exon
chr1:158751596-158754121
Coord C2 exon
chr1:158751518-158751595
Length
2526 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTTATAATGGAATCCAACAGGAA
3' ss Score
4.24
Exon sequences
Seq C1 exon
GGAGCAGTGATGGTTCTGAACTAAGCGAAGAGACCTCATGGCCGGCTTTTGAAAG
Seq A exon
GTAAGAGAAATGATTTACTAAAACTGTTTCAAACTTACTTGGTCTGTCTTAAGGAATGTATGAATTTGAATTTGAAGAGATACATGTTACATATCACTAAGCGACTTAAGTTTTTTACTGGTCAGAAAAAATGACAAATAGACATTTAAATCTGGAATTGTACATGAGAATGGCTATTGGTGATCGTTATGTATGTTTATTTGGTGTTTTTACATAGGGTTTGAATTTTTGAAATTATAATATAGACTTTTAATAATGAATTTCTAATAAAAAGTTTAAAATAACCATAATTAACTTCTATATTCCAAAATGAGATTATTTCCTTAGGTCTGGGTAATTTAATGGTAAGACATTTATTTATCACTTTGTTGCTTTCCTAAGGACAGAATGACAGCTAACTTAAAATTACAAGTAAAGATGGATGTTTGACATAAAGATCTGTGTATGTGTAGTGCTTTGCACAGACCTGCTGTAAGGCCATGCTGCCTTCTCCTCCCCTTAAAGCTATAAACTATGTCATCTGTGTGGAGACGGTGCTCTCCAGTGCTCATTAAACAGAAGACCTCCCTGAGACTAATGAAAAGGTATTCACATAGGTGTTTGCTAAACGCCCATTCGAAATCTTATGTCATTACTTCAGTATGCTTGGGCTCAAGACATTTGACTTGACAGAAAGAATTGTCCCATTTTTACATGTAAACCAAGACCTGAACTTGTAAGCAGTGAGTGCAGTGGGGAGTTGCTGTTTTTTATGCAATACTAAGGAGTGGACCTAGGGCCTTCTACTGAGCCCTAAGATCATTGCTTAGATTAAATATTTATGTTCTATGAAAACTTCGTATCACTCATTTTTAAAAGGAACATTTGAAATTATATTTAAGTCGTCTTAATTTCAGGCTACTTATTGGAAACTTCCTCTTTAAAGATTTCTCAGGAGTATGACAATTTCACTTAAACACTCTACTTTTTGATCTTTTATATACCGAGTGTCCTATTTTGTTATCACCATTGGGGAATTTGTAACAACTTGATTTTATGTATTCTCTTCTGGAGTTTTATTTTCATTCTTTCTTATTTTTTTTTTTTAAGTTTTATTTTTATTTTGTGTGTATAAGTGCTTTTGCCTTTATGTATATCTGTACCATTTCATGCCTGGTACCCACAGAGGTCAAAAGAGGGCATCAGATCACCTAGAAGTGGAATGGCAGATGGTTGTGTGCCACTGTGTGGGTGCTGGGAATTGAACCCAGGCCCTCTGCAAGAATGGACAGTACTCGATGCTGAGCCATCTCTTCAGCTCCCACTTTCATTCTTTTGAGTTTACCTGAAACAGAGAACATAAAAGTTACATTGAGTTTGCTCTTTGAATTTGTAAAGAGTGTCTTTCCCTCGGGAAAAGGCGTAACATCAGTCTTGGTTAAGGTGTATATTGTCATTTTTAGGTTAACAGTATTGTTTCTTAGGTTGCTCAAACTGTAAATACATAACCCAGTCTACCACTGTGTTAGTGTGTTCTCATCTCAGCAGGTTACCTAGGAAGGCAGTTTATAAGGTCTTTCATAACTCAAAATAGTGATTTTCTTGTATAAAAGTTTGTTTTACATACAATTGCCATTAACATGTCTGTACTTGTGCCAAATTCAAAGCAGTGGCTCTTCAGACATTTTTTAAACAGCTAAAAAAAATATAGCCCAGAAAAATTTACACTTGAAATAATAGTACTGTCACACACACACACCAAGTTCCCTGCATCAAGCCTGGGGCCTTAGGCATGTAGCAAATGCTGTATCAGGAGCCATAGCCTCAGCCTCTGTATTCTAACCACAGTGTTCCTAGAGACATACCAAATACCACAGTAGGTTTTTACTTCGGGTATCATATATCACATCCTTTTGACTTTCCCAACTTTCCCAAACAAACACCATTGTTTCTGGGTATATTTCCTGCATCAAGTACAACATGATCTGGGATGAACATGGGTTCCTACTGTCCTTATCATTTATTGCCTTTGTGAGCTGATAGGAAATTACAAACTATGAGTATTTGCTCCCTAGTTTATCTCTACTAGTTTACTTTGAGTTATAGTAGATTTTCTCATTTTTTTTTTTTAAGTTTATAAGCCACATTACTTTTAGGTGTCTTCAGAGGGACATACAATAAAATTTATATATGCCCATATACCATATTTAAACTGGAATCTAAGAAGAGCAAAGGGGCTTTGGAGCATCTTTTCAGGTTTCCATACTATTTGGCCATAAATAGTTCTTAACCTTTTGACAGATGTATGACAGTGAGTGCATGTGTTACTGTATACGATAGCATGTACTTTAGACCTGTGTTTCTAGAGTCAATAGAAAAAATTTAAATGTGTTGAATGTTTTAAAAACGAACCATATCTTACCCCTTTTAAGGATTACTATAGAAAGCTAGATTACATAGGAAACTGGAATACTATTCTAGGTATTGATGATGATCCTATGAATAAAAATATGAGTAATATATACAATTTATAATGGAATCCAACAG
Seq C2 exon
GAACAGATTATACCATTCTCTCGGCCCGGTGACAAGAGTGCCGCGAAATGGCTATCGAAGCCACACGAAGGCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026594-Ralgps2:NM_001159965:14
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.495 A=NA C2=0.519
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: