GgaINT0036719 @ galGal3
Intron Retention
Gene
ENSGALG00000004273 | RGPS1_CHICK
Description
NA
Coordinates
chr8:6619867-6623421:-
Coord C1 exon
chr8:6623367-6623421
Coord A exon
chr8:6619945-6623366
Coord C2 exon
chr8:6619867-6619944
Length
3422 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTTATAATGGAATCCAACAGGAA
3' ss Score
4.24
Exon sequences
Seq C1 exon
GTAGCAGTGATGGTTCTGAACTGAGTGAAGAGACTTCCTGGCCAGCATTTGAAAG
Seq A exon
GTAAGAAAAACTGCCTCTAACTGCATTTCATTATTGAAATATTGCTGCTTATATCTCTCAATCCTGAAAATGATGTTTTATTCTAGTGATCTGTAGATCACTTGTGAGAATTCGAGAGCCAGTGTTAATAAAACTCTAAAGAGGACTGCTGAATCTGGTAAGGCAGCAGAGAAGTACCTTCTGCTCACTAGTAGTTAGCAGACTTTTGTCTAATTGAATGCCTACTCATTGCACAAATTCTTCTAAAAAGATCAGCCAGAGTATCATTAAACCCCAAATGATTTTTCTTCTTTTATGTATTTTCATATCTTGTGTATGGTATTCATGTAACCTGTTGATTTTCACTTTCTCTGAGAAACTTCATCCAGTTTTGTTCTGTTTGTTCTTGCCATTGACATCTTCACTTGGTTTTTCTCCCGTGTCCTCTTGAGTTCACTGTTACTTGCCTCTCCGTTACATAGGAAAGCATGGTAACAAACCTTAGTGAAGTCTTCTTTTGTGGTTCAGAATTAGTATCCTGCCCCTTATCCAAATACCTGCAAATACTCGGGCTATATTGCCTGAGTCCTTTCTCATGGCTTTTGAGAATGTGGAAGAAGACTAACAGCTGCACCTTAGAAAAAGGTGGAAGTTTCATATTCCCACAGTTTGATAAGATGTGCCATAAAGTGCTTAGTTTGCTTCAGTAACTTGATTTCAGGTTATCCTTCAGCTTCAGAACTGCCTTGGATGACTTCTGCCATGCTATGACACATGCTTGTTACACGTTTTTTTGTTGAAGATATTTTTAGTCAGGAACTGTATCACAAACATTGTTCTACTTGAATTTATGTAAGCAATTCAAGTTGTGTTACTTTTTGGCTGAAAATTTTGAAGATATCTCAGTGCCAAAGGTGAACACTAATATTTCATGCTATAAATACAAGGAAACACCCTCAAGGTTTCATTAGGTAAGAAATAAGAACATTCCATGTAAGCATAGCAAGAAGGTAGGATCAGAAAAAAGATGTGTAACTTTTGTGTGCTCTCTGATGCAACATGGAATTTTCAGAGATTTCATCTTACTTTAACTTCAAAGCTGCATTATGAAATTGATCAAGTTCAAGATATTCAGTCAAAAATTGTATGGGAAAGCTTTAGACAAAGAGATGAATTCAGCTGTGTGCACCTCAAGTAACAGAAAAAAAATACCCCTTAAGTTTTAGTAAGTCTCAATGTGTATCTCATGATTCTAGAGAACAGCAGCACTCTCCAGGATTGTTGGAGTGGACCTGTGAGGTAAAGCAGGGTTTTTTTCATCCATGTTGTGAGGAGAGCTGACTGGCCCTGGCTTCTGCTAGTTAAAAGTTTTGCTTCATGTCCAACATAAGTATGTCAGAAGATTTTTTTCCTCTAAATTCCGAATTCCTTCAGTATTTTCCTTCCTCCTAAGAAGGGCACTTGGGTAGCTCCACTTGAAGTTCCATGTTTTTGACAATATTAAGATGGTACGATCACTAGAAAGAACATCCTTGCAATTTTTATCAGTCTGGCTACCACTCTTAAATGAATTATTAATCAAGGGATAAATATTAGTTGTCTGGAATTGATAGGTACTGGCAAATTGGGATGTAGTCAGTGTTGCTAATGACTGTGGCTATGCCATACAAGTGGGAATTCAGTATTCCCCATTTAGAAACAGGATCTTTGGATAGGGGAGCTCAAATCAGCATAATAATAGAAATAAAGTAGAAATAATGTGCCTAAAGGGAAGAAATGAGATGCATATTTCCCTGGTGACAGAAGGAAGTGTATGGAATATCAAATATCCCTGTCTTTTTTTTCTAGCCCTTCAGATATTTTTAACTGGAAAATGCAGAAGGGAGAATTGGAGACTCTGTGGTGGTTTTTTATACTTTTAAAGTATAAAGTAAACTTATTTTGAAACTTGAGAGAGCTTTCAGCATTGGAGCATCCCTTTAGGTTAATCAAAATCACTTCAAATAACTTAATTTCCGGTTGTGGCAGCGTATCATTTTAAGGGTAGTATCTGAAATGCCACTTCATTCTCCGTAGTTGTCAACCTGAGTGTTTCTGAGCAGATTTGCCTTATATAGCTCAAATCCGAGAGTGATGCCCTCCTTGTTATGAAAAAAAGAAATGTAAAGTTAAGAAAAAAACTTACTTCATTTGCAAGTGAAATACCTGTATGCATATGTATACAGCTCAATTATCGGTTTTCTTTCATCTTAATTACTGTTTAATTTGTCCAAATCTTGAATGTACTTTAAAAACAAAAAATATTTCATACATTCTAACATATCTTTTATCTGTAGGTGGTAATTCATTAGTAACATGTTGGTGATCCCTCTTGCAACAGAAGAAATGTTTTGTCTGGCTTCGAAAGAAAGCCACGACAACAATGAACTCATTATTTTTCTCATTTAATACTGTGGACCTTTACTGCATCTCTTTTGTAAGACTTTTAAGGGTTTTTTTGCCTGCTGTTCTGAATCTGGATTGGAACACAACAGTGTTCCTTCTTTAGGCTTCCCATTCTCAGAAGTACCGCCCTGCCCATATAAATGCACCTCTGCAGCTAATGCAAAGCATTTCTGACGAGTGATAGGTTATTTGTTAGGTTTATACTATGTACGAGATACTGCTTGTAAGCTTCTCAGTCATGTTCTTAACCACCTGCTTTCTGCAGAATTGGATTTCAGCATAATACTTTCAATCAGAAAAAAATAGATGAAAATAGGAGGTGCAAAGTGGAGATATTTCTGTTGATTTAAATGGAATTGAGTATATTTTCAGTTCAGAAAATCAACTTTCAGTAAAGCAAAGCAGTATTCAAAATGGAGGCCTAGAACACAAATCCTGGATAAGTGTAGATCAGGTTACGGGTTCTAAAATGTGAAGCTTATGTGTAAAGTTGAACATGGATATCAACTGGGGAATTGCAGTGTATCTTAAGAACAGTGCTTATCAGTCAATCCCAAGGTATTTTGGTAGAGCTTTTGATTCCCTTCAACCAAAAGCTTGTGTGTGTGTATGTCTACTCATAGAATTAGAAATGTGTTCTTTTTTGTAGTAACATCTTAGTCAAAATTTTAAGACATCAACGTTTTATTAATATGCCTTCTCTATAGAGATGTAGTTTCTAAGCAGTAAACACAGGCTTTACGCTCAATGGTCGCCTTCAGTGCTGATAAAACACTTCAGTATTATGAGTGTTGACGAAGTGAACACCTATTCAAATAAAAGGCATGGTATCTACCTCTGCATGTGTTTTTGTAAATAAAATTATCCTGTTTTTTATGTGGAAGAATTGGCTTTGTGATACGGACACAAAAGAAAATTACTAAGCTGTTTTAGCAGTCGTGCTGTTTGTGTGAATAAAAGTATATGTAATACATACAATTTATAATGGAATCCAACAG
Seq C2 exon
GAACAGGTTGTACCATTCTCTCGGTCCGGGGACAAGAGTGTCACGAAATGGCTATCGAGGCCACATGAAGGCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004273:ENSGALT00000006794:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.421 A=NA C2=0.481
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]