BtaINT0122051 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010718 | RALGPS2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:HGNC Symbol;Acc:HGNC:30279]
Coordinates
chr16:61704317-61706046:+
Coord C1 exon
chr16:61704317-61704394
Coord A exon
chr16:61704395-61705940
Coord C2 exon
chr16:61705941-61706046
Length
1546 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAA
5' ss Score
7.09
3' ss Seq
TTTTCTTTTCACTTTTATAGTTC
3' ss Score
10.03
Exon sequences
Seq C1 exon
GAACAGATTATACCATTCTCTCGGCCCGGTGACAAGAGTGGCACGAAATGGCTATCGAAGCCACATGAAGGCCAGCAG
Seq A exon
GTACAATCCCCCTGCATTCAGGGGTCACAGAACTCCCCTCTGGTGGTGGTGACTGGCTTTCATAGGTGTGGTCTCACATTACTTCTGTTCTTTCTCAGATAATTGGTTTCAAAGCTAAATTAAATGCCCATGAAAACTTCCTTTCCAAGATTTAATCTAGAGATAAATTTGAAGTATTCTTTCTGATCCACAGAGCTAATTGCTAAAATTTGCATCTTTATGTCACATTCTTTAAATAATCCAAATCAGTAGCTTTTTAACTGCACAGGTCTTTCTAACATTGCTGATTATTAGAGGAGCAGTGCAAAAACCCACTTGTTTTTCAAAGGCTGCAATCAAAGAATTTACTACATTCAGTTTGTCTTTTTTAAGGATTTTTCAGATTAACTGCAGGTCTGAATTTAAACAAGTCTGTTTTATGAAATAATATTTGTGTATTTAACTCATGTTCATTTGGTTATCTAGTTAATCCTGATCTCCTTCTGCACTACATTAGCTGCTGAAGAAAATAAAGATGGTAGATTGATTGGGGACTGGAGGTTAATGGTAGTGAATAATCAACCAATTCTCATAAGACAATGCAATAGCAAACATTTTAAAGTTAATTTTATGTCAGTTTAATAGTGTCTAATCTCCTTGGATATAAATAGCTCCAGCATGAAATTTCTGGTGGTTTCTAGGTTTTTAAGTCATTGAGAGCACCTAAACAATCAAAAAGAGATAAACTTCAGTTTTTATCACTGTTGTAGAAATTCTGCAGCTCACATCAAATCACTGGAGAATGACAGATTTTTTTTTCCATCAGTGTATATGTTTTAATTGACTCATAAAAATTGTTCTGTTCTTAACTGTAGGACCTTAAATGAGTTGGGGAAAGATATTTAAATGTTTGATTATTCTGTGATGGAAGCAATCTTGAGTTTTAGTTAATCCTTTCTTTCAGAGTTGTTAGGCTTTAATCACTTAGATGCACTGATGACATTAAAATGTCATTAAATTTTATTGCAGTAAGTTTTGATTTTTTAATATGTTGTTAATTGCCTTTTTTACTTCTCTCACCTATTTTGGAATTGAGCATGTATTTTCTTTTGCTTTTTTTCCTTTTTTGATTTTCTGATATTTTTATTTTGCGTTTTATATGCTTAAAAAGACTTTTAACATATAGAGTCCTCACCTTTCCTACCAGAACTTGAGTTTCTTCTGGGGAAAAAAAGGTATCAGCAGTGCTGCAGTATGACATGTTGAGAAGAAAAGTCTTGAATCCCTAATTTACTCTTTACTAAAGTGAATCACTGTATTCTTTCTGAATTATGCTTGTTCAGATATGCAGTAAAATGCGTTTTTTAACCATCTGCTGACTTTAATAACTGCCTGATTCATTTTGTGACAGCTTGTAAATTTCAGATCAGTAAACCTTTGTAATTGTCAGTGTCTTCTCATTCTTAAAAAAGTAGCAGTCTTAAAATTGAAAATAATTAATTTTATTTAAATACCTACTTGATAATTACTCAAGTGCTTATATGTTCTTTTCTTTTCACTTTTATAG
Seq C2 exon
TTCTGCAGAATCAGAGGATTTGGCAGTACATTTATATCCAGGGGCTGTTACTATTCAAGGTGTTCTCAGGAGAAAAACTTTGTTAAAAGAAGGCAAGAAGCCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010718:ENSBTAT00000034000:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0016924=PH=PU(17.0=52.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development