MmuINT0131382 @ mm9
Intron Retention
Gene
ENSMUSG00000026594 | Ralgps2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:MGI Symbol;Acc:MGI:1925505]
Coordinates
chr1:158749944-158751595:-
Coord C1 exon
chr1:158751518-158751595
Coord A exon
chr1:158750050-158751517
Coord C2 exon
chr1:158749944-158750049
Length
1468 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAA
5' ss Score
7.09
3' ss Seq
GCTTCGTCTCATTGTTACAGCTC
3' ss Score
8.53
Exon sequences
Seq C1 exon
GAACAGATTATACCATTCTCTCGGCCCGGTGACAAGAGTGCCGCGAAATGGCTATCGAAGCCACACGAAGGCCAGCAG
Seq A exon
GTACAATCCCCTGCATCAGGGGCCATAGAACTCCCTTCTGGTGTTGGTGGCTGGCTCATATGGGTGTGGTCTGACATTTTTTTCTCTTCTTCCTCAGCTAATTGGTTTTAAAACTAAACAAATTGCCCATGAAAATTTTCTTTCAAAGATTTAATGCAGTTTAAATTTGAAGTATTCTTTCTCAATCACAAGGCTAATTATTAAAAATTGCATCTTTATGTCACACTTTAAAAACGCTATTAGACCTTTAATGACACACTTTCTAGTGCTGCTAATTATGGCTGAGCTATACAAAAATCAATTTATTTTTCTTACGTTGCAATCAGACCATTTATTTTTCTAGTAAGTTTATATCAGTTTGTCCTTTCAAGGTAAGCTTTTTCTTTTCCTTGGATAGACCATAGAGCCTGGATTTAGAAACATCTTCTTTCATTAAGTAATTTTTATTGAGTTCTCTACTTAGCTGGGCCTCTCTGAACTCTTCTAACTGTAGGAGCACCTAAAGATGGTAGATGCAGGGGGGCGGGAACTCGAGTAACAGGAAGTCACCTCAGAGCAACGAGAGGCAAACCCTGTCAGTTTGATGGTGTCTCATCCCGTGTGTCCCCTCCATACAAACAGCTGGAGCATGAAATCTCTAGGTTGTCACTTTGAAGACACCTAAATAATCATAAAGAAAATTGAGCTTCTATATTCTTGGCTGTTTTAAGAGCTGTACATCTCATAACACATCACCAGAGACTGGCATTTAAGTCATTCTATCTTAAACATAGGTTCTAAACTCAACTGAGGGAAGACATTAAAATGAACGCATATGAAAAGGGAATTGAAGTGTTAGGTTTCTGTGTTACAGAGCTCTCTGTTAGGCTTCCAAATGTCACTAAAACTTCTTACCCAGAAAGCCAGTTTCTAAAAGCCCGTGACTGACACAGTTACTTTTATTTAAATACTTTAAAAGGAAGTGTGAGTTTTTTGGGGTTGTTTTGTTTTTTTTGTTTTTTTTTTAGGGAGTGGGGTGGAGTGTTTGTTGGTTGTTTATTGTTTTTGTTTGTTTGTTATTTGTATTTCTCTGTTTTGTATACTTAAATACTTGTAACAAAATCGTTGTCTCCTTGCCAACTGTTTGTGATGGTTTACCACAGTGATGTACTGTGGCATGTTAAAAAATTACCTGGAAATCTTAACTAATTTTAGTTAAAGTAAATTGCTGCTTTCTTTCTAAAGTCTACTTTTTGAAATATGTGATGAATGTGTATTTAAACATCTGCTGGCCTTAATAACTTCCTAATTAACCTTTACGACAGCTTAAAACTTTAAAATCAGTAAGTCTGTAAGATCCTCCGTATCTTACCATCTCTCAATAAAGTCTCAGAGTTTTCAACATAAGAATAATTGGATTGTTTATGAACCCTCTCAGTGACCACCGCAGACACACTCTTAGCCACTTTGCTTCGTCTCATTGTTACAG
Seq C2 exon
CTCTGCGGAGTCGGAAGATTTGGCGGTGCATCTGTACCCCGGAGCTGTTACTATTCAAGGTGTGCTCCGGAGGAAAACCTTGCTAAAAGAAGGCAAGAAACCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026594-Ralgps2:NM_001159965:15
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.519 A=NA C2=0.022
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0016924=PH=PU(17.0=52.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGATTATACCATTCTCTCGGCC
R:
TGTGGGTTTCTTGCCTTCTTT
Band lengths:
182-1650
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: