BtaINT0122600 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016739 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr17:63400256-63401990:-
Coord C1 exon
chr17:63401818-63401990
Coord A exon
chr17:63400394-63401817
Coord C2 exon
chr17:63400256-63400393
Length
1424 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
GCGAGAGTCCTCTCTCCCAGGTG
3' ss Score
4.13
Exon sequences
Seq C1 exon
AGGCTGGGGGCCCAGCCAGGGCCCTGGTCCCGCCCTCAATGACTGTCCGAGAAGGCTACCTACTCAAGCGCAAGGAGGAGCCTGCCGGCCTGGCCACACGCTTTGCCTTCAAGAAGCGCTACTTCCGGCTCAGCGGGGAGATGCTGTCCTACTCCAAGAGTCCTGAGTGGCAG
Seq A exon
GTGGGGCTCCAGCCCGAAGTGGAGGGACTTCCACGGTGGCCTCCCTCACAGTGCTGCCTCTTTGTACCCAGGGGGATACTGAGGCCCAGGAGGGGACAAGGACTTGCCCAAGGTCCCAAAGCAGCTTAGCAAACTCAAATTCCAAGGCCAGGCTCTGCTAATACCTGTGAGTCCAGGTGGGCACAGAACAGGTACAGGCAAACGCTTACACATACCATCAGATGATCTTCAGCATGTGCACCTGTGGTGGCTGGGACGTACCCACCCAGATGTGGACACTCCCAGGGCGTGGACAATGCTTAGCCCTCCTCAGCTGTTTCCATGCAGGTCTCTGCCCGCACACCATGCATGCTAAGTCACTTTGGTCATGTCTGATTCTTTTGTGAGCCTATGGACTGTAGCCTGCCAGGCTCTTCTGTCCATGGGATGCTCCAGGTGAGAATACTGGAGTGGGTTGCCATGCCCTCCTCCAAGGGATCTTCCTGACCCAGGGATCAAATCTGAGTCCCTCTTGTCTCTTGCATTGGCAGGCAGGTTCTTTACTACTAACCCCACCTGGGAACCCCAAAGGGGATGCTGTGGCTGCATGGGCTGGGAATTGAACCTGGGCCTCCCGTGTGGCAGGCGAGAATTCTACCACTGAACTACCCATGCACCCAAGTGCTATAGAGACTCACAGAAAATTGGATCTCACCCAAAGGTACATGCACTCATATCCAGGCTTTCGTTCACCCATCCATTCACCCATCAAGCACTTATCAAGTACCTACTATGTACCATGCAGTGTTCTAGGTGCTGGAGATACTGCAGTAAACAAAACACAAACTCCCTGCTCTCGTGGGGCTGCCATTCAAGTCTAGCTCAAACTGAGACACCCACGGGGATCTACCCATTTCTGTGTCTGCACACCCACAAATCATAACAGCTACCACTGGAGACGGTGTCCACACTTATTCTTTCTACTTTATCAGCAGAGTGCAGATTCTAGAGTTCAACTCCCTGTCCAGTTCTGGCTCCACCAGCTGAGTGGCCTCTGGAGGGTCCTTTATTCTCTTATGGCTCAGTTTTCTCATCTGTAAATTGGGAGGAATGATGGACCCAGCCTCAGAAATCTGTTGTCATGATGAAATAAGTCGGTGGGTGTAGAGTGCTTAGAACCACATCCCAAGTGCAGTAGCAGGGATTGCCATGGTGATGGTGATGATGATGGAAACTGATGCCCAGAGAAGTGATCACTGCGAGAGTGATTGCGGGACTCACAGGGCCGACAAGTGGACACGCACATAGCACAGATGCACCAGGCTGACTGTCCCCATGCCGGAACACACCGCCCGCTGCACACACCCACAGGAAAGCTGTCCCTAGGCCCAGTCTCCCTGGCCCCTGGCCCTAGCCTGCCCTGCAGCGAGAGTCCTCTCTCCCAG
Seq C2 exon
GTGCGCTCGTCCATCCCCGTGTCGCACATCCGAGCCGTGGAGCGCGTGGACGAGGGCGCCTTCCAGCTGCCGCACGTGATGCAGGTGGTGACGCAGGACGGCGCGGGGGCGCCGCACACCACCTACCTCCAGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016739:ENSBTAT00000022254:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(40.2=74.1)
A:
NA
C2:
PF0016924=PH=FE(42.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTCCCGCCCTCAATGA
R:
CTTGCACTGGAGGTAGGTGGT
Band lengths:
288-1712
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development