MmuINT0132019 @ mm10
Intron Retention
Gene
ENSMUSG00000029602 | Rasal1
Description
RAS protein activator like 1 (GAP1 like) [Source:MGI Symbol;Acc:MGI:1330842]
Coordinates
chr5:120674567-120675527:+
Coord C1 exon
chr5:120674567-120674739
Coord A exon
chr5:120674740-120675389
Coord C2 exon
chr5:120675390-120675527
Length
650 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
3' ss Seq
CTGTCCCTGGCGGCCCACAGGTT
3' ss Score
8.31
Exon sequences
Seq C1 exon
AGGCCGGGGGTCCAGCCTGCGCCCTGGTCCAACCCTCAACCATTGTTCGAGAAGGCTTCCTGCTGAAGCGCAAGGAGGAGCCTGGAGGCCTGGCCACGCGCTTTGCCTTCAAGAAGCGCTACTTCCGGCTGAGTGGGCGGGACCTCTCCTACTCCAAGACTCCGGAGTGGCAG
Seq A exon
GTGGGACTCCAACATGCCCCGCCCCCAAGCTCCCACCTCCTTTCCCCTCCCATCAGAGCAGCTGTTCCAAACTTTTGGCTTACTCTCAGCTTGGGGCCAGCATGGCCTGCGACAGGGATGCTGGGCATGCTCTCCCAGGTGTGGACACGTGGGGGTGGAGGTGGGGGGCCACAAAGTCCACACCAAGCATCATAGGCTCACACACAGGATCCATCTGTCCTGACGGCTCTGAGCAGGTGTGTATCCGGGCACTCACTCAGCTGCGTAATCACCCGTGTATCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTGGGCTCTGTGCCAGCTGTCCTGTGCTAATGAGTGTAACCCGAGGGAGACTAGGACTTGGCTTGTGGGCACTGCTTGCAATTCATCAACTGGCGATGATGATTGTGGGACGGTGGTCCTGGTTGGTGATGATAGTTGTAATGATGACAATGGTGGTGATGATGATGATGGTGGTGGTGAAGCAAACTCAGACCTAGAAAAACCGTGTCACTCAGCTGGCCGCAGAGCAGGACTGTGGAGAGGACACAACAGAGCTATCAGGAATTGAATATGGGGCCTCAAGCACTCCACCTGGTGTCACAGCCCTGTCCCTGGCGGCCCACAG
Seq C2 exon
GTTCACACATCCATCCCGCTGTCCTGCATCCGGGCTGTGGAGCATGTGGACGAGGGTGCCTTTCAACTGCCACACGTCATGCAGGTGGTGACACAGGATGGCGCCGGGACGTCACACACCACCTACCTCCAGTGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029602:ENSMUST00000031606:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(40.2=74.1)
A:
NA
C2:
PF0016924=PH=FE(42.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGTCCAACCCTCAACCAT
R:
ACACTGGAGGTAGGTGGTGTG
Band lengths:
286-936
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types