RnoINT0124485 @ rn6
Intron Retention
Gene
ENSRNOG00000001374 | Rasal1
Description
RAS protein activator like 1 [Source:RGD Symbol;Acc:1311820]
Coordinates
chr12:41420607-41421813:-
Coord C1 exon
chr12:41421641-41421813
Coord A exon
chr12:41420745-41421640
Coord C2 exon
chr12:41420607-41420744
Length
896 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
3' ss Seq
CTGTCCCTGGCCGCCCACAGGTT
3' ss Score
9.52
Exon sequences
Seq C1 exon
AGGCTGGGGGATCAACCTGCGCCCTGGTCCAACCCTCAACAATTGTTCGAGAAGGCTTTCTGCTGAAGCGCAAGGAGGAGCCTGCAAGCCTGGCCACCCGCTTTGCCTTCAAGAAGCGCTACTTCCGACTGAGTGGGCGGGACCTCTCCTACTCTAAGACTCCTGAGTGGCAG
Seq A exon
GTGGGATTCCAACACGCCCCGCCTCCCCACTCCTCCCCATCAGAGCAGCTATTCCAAACTCTTGGCTTACTCCAAGTTTAGGGCCAGCCTGGCCCATGCCAGGGACACTGGGCACACATACTCTGCCAGGTGTGGACATGCGGGGGCGGGGGCCATAAAGTCTACACCAAGCATCATAGATTCACACGTAGGATCCATCTGTTCTGACGGCTCTGTGCAGGTGTGTATCCGGGCACTCATTCAACTACGTAATCACCCGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTCCATCTGTGCCGGGCTCTGCACTAGACAGAGAAGCCGCTGTCCTCTGTGCTAATCAGTGTAGCCCGAGGGAGACCAGGACTTGACTTGTGTGTCCGACTTGCATTTCATCAGCTGTTCGGGTTGCCAGGCCGGGTCCACAGATCAAGTGACTTTGGAAGGGTCATTTACCTTCAGGCCTCAGTTTCCTCATCTTCTAACTGGGGAGAATAACAAACAGACCCAGTGTCAGAAGGTGGTTGTGGTGGTTGAGTGGGCTGATGGAAGTGTGGTTCTGAAAGCCACAGCCGAGTGCCATGTCAGCAGCTGCCGTGGCAAGGATGATGGCGGTGCTGATGCTGATGGTGGTGCTAAAAGATTCTAGTGATGATGGTGTCAGTGATACTGACAAAAGCAAGCTCAGACTTAGAAAAACCAAAGCCACTCAGTAGGTGGCAGAGTGGGACTGTGGGGAGGACACCAGAGAGCTATTAGGAATTGAACACGGGGCCTCGAAGACCCCACCTGGTTCCACAGCCAATGGCATGCTGTCCCTGGCCGCCCACAG
Seq C2 exon
GTTCACTCATCCATCCCGTTGTCCTGCATCCGGGCTGTGGAGCGTGTGGATGAGGGTGCCTTCCAACTGCCACATGTCATGCAGGTGGTGACACAGGATGGCACCGGGGCATCACACACCACCTACCTCCAGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001374:ENSRNOT00000001856:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(40.2=74.1)
A:
NA
C2:
PF0016924=PH=FE(42.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTGGGGGATCAACCTG
R:
CTTGCACTGGAGGTAGGTGGT
Band lengths:
311-1207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]