BtaINT0122628 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015537 | RASAL2
Description
RAS protein activator like 2 [Source:HGNC Symbol;Acc:HGNC:9874]
Coordinates
chr16:61288809-61289822:+
Coord C1 exon
chr16:61288809-61288953
Coord A exon
chr16:61288954-61289585
Coord C2 exon
chr16:61289586-61289822
Length
632 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
GGTCTTTCTTTCTTCCCCAGTGT
3' ss Score
9.18
Exon sequences
Seq C1 exon
GGGAGTTCATCAAAGCGTTGTATGAGTCAGATGAAAACTGTGAAGTGGATCCCAGCAAATGTTCATCCAGTGAACTTCTGGACCATCAGAGCAACCTGAAAATGTGCTGTGAGCTGGCTTTCTGCAAGATCATCAACTCTTACTG
Seq A exon
GTGAGCTGCTGTCAGTGCTTCATTCCCTGCTTATGGAACTTGACTTTTTTCATATGAAAGTTATCACAGTGTTAACTGTCATTTCCCAACCAAAGGAAGAGAAGTTGAAAGTTTCCCTAACACAGTTTTGTCTAAAATATAAACCTATATTGTAAGAAGTCCCCCTGAACTATCTTCATAAATGTAATCTTTCCCCAGAATATTAACCCCACATCCTCGAATACCAAAAGTACTTTAAGGACTTTTAAACATATTTACTAGTGTCAAAACAGATACGTTAATGATTTCTGATCACTATTCTCACCGGCAGTCAGTAAGATTTTAGATTTGTGATGAGCAGTCTGTAGAGAGATTACGCTGAGCTAGAGTAAACCAAATGGGTTAGTCAGGAGCTGCATGCCATCTTCCCACTTTGCAAAACCTAGTTTACACTAGTTCCTGAGATTTACAGCATCAGGTGTCTGGTCTCCATCTGGATGTCTATGATTTGTCCACCACCTCTCAGCCGTGAATCAACAGAGTTCTCTCTATTATTCCCTCCTCATAGTCTGACTCTGTGGGGCCACAGTGGGATCCACCCGGGCTTTTTTGGGTTCTAGTACTTTTACCTTTGGTCTTTCTTTCTTCCCCAG
Seq C2 exon
TGTTTTTCCTCGTGAGCTGAAAGAAGTGTTTGCATCCTGGAAGCAGCAGTGCCTGAACCGCGGCAAGCAGGACATCAGCGAGAGGCTCATCAGCGCCTCGCTGTTTCTCCGTTTTCTGTGCCCGGCCATCATGTCTCCCAGTCTCTTCAACCTCATGCAGGAGTATCCTGATGACCGCACATCTCGGACTCTGACTCTCATTGCCAAGGTCATCCAGAACCTGGCCAACTTTGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015537:ENSBTAT00000020658:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(27.9=100)
A:
NA
C2:
PF0061614=RasGAP=PD(44.2=95.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGTTCATCAAAGCGTTGT
R:
GGCAATGAGAGTCAGAGTCCG
Band lengths:
350-982
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development