GgaINT0038834 @ galGal3
Intron Retention
Gene
ENSGALG00000004323 | RASAL2
Description
NA
Coordinates
chr8:6770940-6772201:-
Coord C1 exon
chr8:6772057-6772201
Coord A exon
chr8:6771177-6772056
Coord C2 exon
chr8:6770940-6771176
Length
880 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
CCTTGTTTATTCTTTCTCAGCGT
3' ss Score
8.87
Exon sequences
Seq C1 exon
GGGAGTTTATCAAGGCTTTGTATGAGTCAGATGAAAACTGTGAAGTGGACCCCAGCAAATGTTCATCCAGTGAATTAACAGACCATCAGAGCAACCTGAAAATGTGTTGTGAGCTGGCCTTCTGCAAGATTATCAATTCCTACTG
Seq A exon
GTGAGGCATCTCCCCTCCCCTTCTCCCCCGTTAGGTCATTTGCTCAGGAGGTGCCCATTCCTCCACTAAGGGTGAGAAAACAGTTGTACAGGGAAATGGCACAGACCTTCCAATAGTTCTTCTAATCCTGTCCTTGTTTGTCGTCCTCACTGTCCTGCTGTGTGTGAGTCAGTACCGCAGGTGGAACTCACCCCCAGGTCAGGGTGCTGCAGTCCAATATACCATACCTACAGCAGCTTCCGCTGGCATGCTCTGCTAAGGGAACTGCAGCTGGGAGGGAATCTGGTGAGAACACTGCAGCTGAGTTTGAGCTTGGGATAAAAAGCTGAAAGTTCAGATATTCAGATATTGGGGAAAGCTCTCAGCCCCCTTAGGTCTGTAAACATGAGCAGGAAAACAGAAGGAGGGAGGAAACGTTGGCTGAGAGCTTTCTGTTAATCTCTGTTTCTGAGTGCTATTGCAAGAAGGGCCTTTCTGCCTTGAGGGGAGCACATGTGGAGCACTGAGCGAGGTTAACAAGCAAGATAACAGTCGTAGTCATGGAGATGAGTTCAGTTTGTTTTTTATATCCTAACACCATATTTGCTCCCAGGTAGCAATGGATAGGTAGTTCTTAGCTTCTAAGCCTGTGTGTCTGAAAAGGGCTTCGTCTAATAGATATTAAAAGGGATGCTTTAAGGAGTACTTAAGTATCACCAGATTAAGTGAGCATCCCAGAATAGATGCCTAATGACATTTCCTAGCCTAGGGGAGACAAGAGACAATAAATAAAGCCGATTACAATTTCTCACAGATAATTGTTCCAGGTGATTGATCATCAGTTCAATTTGCTATCTCTCACTGCCCGTGCGATTTTACGTCCTTGTTTATTCTTTCTCAG
Seq C2 exon
CGTGTTCCCTCGTGAGCTGAAGGAGGTGTTTGCATCTTGGAAGCAGCAGTGCCTGAGCAGGGGCAAGCAGGACATCAGCGAGCGGCTGATCAGTGCCTCCCTGTTCCTCCGCTTCCTGTGCCCCGCCATCATGTCCCCCAGCCTCTTCAGCCTCATGCAGGAGTATCCTGACGACCGGACATCGCGCACGCTCACACTCATTGCTAAAGTCATTCAGAATCTCGCCAATTTTGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004323:ENSGALT00000006891:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(27.9=100)
A:
NA
C2:
PF0061614=RasGAP=PD(44.2=95.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTGTGAAGTGGACCCCAG
R:
AGCAAAATTGGCGAGATTCTGA
Band lengths:
346-1226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]