HsaINT0137711 @ hg19
Intron Retention
Gene
ENSG00000075391 | RASAL2
Description
RAS protein activator like 2 [Source:HGNC Symbol;Acc:9874]
Coordinates
chr1:178420706-178421787:+
Coord C1 exon
chr1:178420706-178420850
Coord A exon
chr1:178420851-178421550
Coord C2 exon
chr1:178421551-178421787
Length
700 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
GTACTTCTTTCCTTCCCTAGTGT
3' ss Score
9.86
Exon sequences
Seq C1 exon
GGGAGTTTATCAAAGCTTTGTATGAGTCCGATGAGAACTGTGAAGTGGATCCCAGCAAATGTTCATCTAGTGAACTGATAGACCATCAGAGCAACCTGAAAATGTGCTGTGAGCTGGCTTTCTGCAAGATCATCAACTCTTACTG
Seq A exon
GTGAGCTTATCTTATCCTCTGCCTTACATTTTTTCATGTAAAGGTCATCACAGTGGAACTTACATTTTTTCATGTAAAAGTCATCACAATGTTAACAATTATTTTACAACCAAAGGGGAGGGTCTTGGAGAAAAATTGAAAGTTTCCCTAATACAGTCCCGTCTAAAATTGAAATCTCTATTGTAAGCAGAAGTACTTTTGAACTGGCTATCTACATAAATATAATCTCTCTAATAGAATATTAGTACTATAGCCTCTAATATCAAAAGTATTTCTTTTGCTTTCTAAAATATTTACTAGTGTTGAACAGATGTGTTCATGAATTTTGATCATTGCTCTAACTCCAGCAATTGGCGAAATTTTGGAAGATTTTTGATAAACAGTCTTTAGAGAGATTATGGTGAGTTATACTAAACCAGATGGTTTAGTCAGGAGCCTCATGCCATTTTCCCACTTTGCAAAACTAAATTTAAACTAATCCAGAGTTCTGTAGCCTTGGGTTTCCAGTCTCCATCTGGCCTCTGTGAATTTTCCACCGCCTCTCAGCCATGAATCAGGTAAAACCTCATCCCGGAATTTCTACTAGGTCCTCCTCACAGCCTGACTCTTAAGCAAAAGTATATTGGGTCAGGGTGGAATCACTTGTGCTTGTACTGGTACTTCTGTGTTTAGAGGTTTTGGTACTTCTTTCCTTCCCTAG
Seq C2 exon
TGTTTTCCCTCGTGAGTTGAAAGAAGTGTTTGCATCATGGAAGCAGCAGTGCCTGAACCGTGGCAAGCAAGACATCAGCGAGAGGCTCATCAGTGCCTCATTATTTCTCCGTTTTCTGTGTCCAGCCATTATGTCTCCCAGTCTTTTCAACCTTATGCAGGAGTATCCTGATGACCGCACATCTCGGACTCTAACTCTTATTGCCAAGGTCATTCAGAACCTGGCCAACTTTGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075391-RASAL2:NM_004841:8
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(27.9=100)
A:
NA
C2:
PF0061614=RasGAP=PD(44.2=95.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGAAGTGGATCCCAGCA
R:
GCAAAGTTGGCCAGGTTCTGA
Band lengths:
343-1043
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)