BtaINT0122630 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011602 | RASAL3
Description
Bos taurus RAS protein activator like 3 (RASAL3), mRNA. [Source:RefSeq mRNA;Acc:NM_001102236]
Coordinates
chr7:8717099-8717639:+
Coord C1 exon
chr7:8717099-8717243
Coord A exon
chr7:8717244-8717494
Coord C2 exon
chr7:8717495-8717639
Length
251 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
CTGGTTGTGCTGGACTGCAGGAC
3' ss Score
5.95
Exon sequences
Seq C1 exon
GCCTTGGTGACAGACCTGGGCACCGCAGAGCTGGCACGCAGTGGAGGCCGTGAGGCACTGCTGTTCCGGGAAAACACATTGGCCACCAAGGCCATCGATGAGTACATGAAGCTGGTGGCACAGGATTACCTCCAAGAGACGCTGG
Seq A exon
GTGAGCAGAGTGGGGCAGGGGTCAGAAGCTTAGTTGAGCCCGCTAGGGCAACCCAGGAGAAATCTGAGAACCCTTGGGTAAACTTGGATTCTGGTAGTGGGTGATGCCCTGGGGATGCTGGGATTCTAGAGCGAACTGGAGGTTCCCCAAGATTTTAGGTGCCTCCGAAGTAGGTTGGAGATGGAACTGGAGGCTGGGTGCTGTGGGTTGTGGTCATGGTCCAGGCCCACTCTGGTTGTGCTGGACTGCAG
Seq C2 exon
GACAGGTCGTGCGGCGTCTCTGTGCCTCCACCGAGGACTGTGAGGTGGACCCCAGTAAATGCCCAGCCTCAGATCTGCCCCAGCACCAGAGCAGACTGCGAAACAGCTGCAAGGAGGTCTTTGAGAACATCATCCACTCCTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011602:ENSBTAT00000015416:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.082
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PU(27.3=95.9)
A:
NA
C2:
PF0061614=RasGAP=FE(27.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGTGACAGACCTGGGCA
R:
TGTAGGAGTGGATGATGTTCTCA
Band lengths:
287-538
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]