RnoINT0124512 @ rn6
Intron Retention
Gene
ENSRNOG00000006167 | Rasal3
Description
RAS protein activator like 3 [Source:RGD Symbol;Acc:1309019]
Coordinates
chr7:14408429-14409348:-
Coord C1 exon
chr7:14409204-14409348
Coord A exon
chr7:14408574-14409203
Coord C2 exon
chr7:14408429-14408573
Length
630 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
3' ss Seq
CTGTCTTTGCTGGACTGCAGGCC
3' ss Score
7.37
Exon sequences
Seq C1 exon
GCATTGGTGACAGACCTAGGAACCGCAGAGCTGGAGCGCTGTGGAGGCCGTGAAGCGCTGCTATTCCGAGAAAATACCTTAGCCACAAAGGCCATTGATGAATACATGAAACTGGTGGCACAGGAGTACCTCCAGGAGACCCTGG
Seq A exon
GTAAGCAGAGAGAGGGATTGGTGCCAGAGGTCCAGGAAGTGCCGGGCGAAACTGCCTTCTGGGAGTGAATGGTGCTTTGAGGTACTAGCGTCTGGAGTGCAAGTGGAGTTGCTATTTCCCCAAGGCGTTTGGTGCTTACAGAGTAAGTCGGAGATAGGCTTTCTCTTAGATGGGGTTTTTATTGCTGCAAATGAGACACCATTACCAAGAAGCAAGTTGGAGAGAAACTGGCTTAGCTTTCACTTCCATGTTGCTGCTCTTTATTGAAGGAAGTCAGGGATTCAAACAGGGGAGGATCCTGAAGGCAAAAGCTGATGCGGAAGCCATGGAGAGACATTGCTTACTGGCTAGCTTCACGTGGCTTACTCAGCCTGCCTTCTTATAGACCCAAGACCACCAGCCTGGGGCTACCACCACCCACAATGGAAGGGGCCCTCCCGTATGGATTACTAATTGAGAAAATGCCGTAACAGCTGCATCTCATGTAGGCCTTCCCTCAACTGAGGCTCCTTCCTCTCCGAGGACTCTAGCTTGTGTCAGGCTGATACACGAAACCAGCCGGTACAGGGTTGGAGGCTGGGTGTGATGTGTTTGGGCTCGTGCCCTTAGACTGTCTTTGCTGGACTGCAG
Seq C2 exon
GCCAGGTTGTGCGGAGTCTCTGTGCCTCCACCGAGGACTGTGAAGTGGACCCCAGCAAGTGCCCAACACCGGAGCTGCCAAAATGCCAAGCTAGACTGCGAAGCAGTTGTGAGGAGGTTTTTGAAAACATCATCCACTCTTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006167:ENSRNOT00000066722:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PU(27.3=95.9)
A:
NA
C2:
PF0061614=RasGAP=FE(27.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGACAGACCTAGGAACCG
R:
TTGTAAGAGTGGATGATGTTTTCAA
Band lengths:
286-916
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]