BtaINT0122632 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011602 | RASAL3
Description
Bos taurus RAS protein activator like 3 (RASAL3), mRNA. [Source:RefSeq mRNA;Acc:NM_001102236]
Coordinates
chr7:8718753-8719278:+
Coord C1 exon
chr7:8718753-8718989
Coord A exon
chr7:8718990-8719076
Coord C2 exon
chr7:8719077-8719278
Length
87 bp
Sequences
Splice sites
5' ss Seq
TCCGTAGGT
5' ss Score
4.86
3' ss Seq
CCACTTGGGCTCTGATGCAGGTT
3' ss Score
5.97
Exon sequences
Seq C1 exon
CTGGTTCCCAGCAGAGCTGGGCACTGTGTTCTCAGGCTGGCGAGAAGCATGCAAAGCACGTGGCTCTGAGGCACTGGGGCCCCGACTCGTATGTGCCTCTCTCTTTCTGCGGCTCCTGTGTCCTGCCATTCTGTCACCCAGCCTCTTCGGCCTAGCACTAGAGCACCCGGCACCTGGCCCAGCCCGCACCCTCACACTGATTGCCAAGGTCATCCAGAACCTTGCCAACCGTGCTCC
Seq A exon
GTAGGTGCTGGGAGGCTGGGTAGCCACACTGGGGCGGTGGGGGTGGCAGATGCTGGACCTGACCCACCCACTTGGGCTCTGATGCAG
Seq C2 exon
GTTTGGTGAGAAGGAAGCCTACATGAGCTTCATGAACACCTTTCTGGAGGATCATGGACCTGCCATGCAACATTTCCTGGACCAGGTGGCCACGGTGGATGCAGACACAGCACCCAGTGGTTATCAGGGCAGCAGTGACCTGGCCCTCCAGCTGGCAGTCCTGCATGCCCAGCTCTGTACTATCTTTGCTGAACTTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011602:ENSBTAT00000015416:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PD(44.2=95.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCATCCAGAACCTTGCCA
R:
GTCACTGCTGCCCTGATAACC
Band lengths:
170-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]