RnoINT0124514 @ rn6
Intron Retention
Gene
ENSRNOG00000006167 | Rasal3
Description
RAS protein activator like 3 [Source:RGD Symbol;Acc:1309019]
Coordinates
chr7:14407114-14407648:-
Coord C1 exon
chr7:14407412-14407648
Coord A exon
chr7:14407316-14407411
Coord C2 exon
chr7:14407114-14407315
Length
96 bp
Sequences
Splice sites
5' ss Seq
TCCGTAGGT
5' ss Score
4.86
3' ss Seq
CCAGGTTGGCTCTGACTCAGGTT
3' ss Score
2.43
Exon sequences
Seq C1 exon
CTATTTCCCAGCAGAGCTGGGCACCGTGTTCTCAAATTGGCGGGAAGCATGCAAAGCACGAGGCTCTGAGGCACTGGGCCCCCGGCTGGTGTGTGCTTCTCTCTTCCTAAGGCTCCTATGCCCCGCCATCTTGGCACCTAGCCTCTTTGGCCTGGCACCAGAGCACCCCGCCCCAGGCCCAGCCAGAACTCTTACACTCATCGCCAAGGTCATCCAGAATCTTGCCAACTGTGCTCC
Seq A exon
GTAGGTGTCGGGAGAATTCGTGGCAAGGATGGCATCGGGGAGTAGGGGGGGTTGGCGGGTGTCTGTCCTGACTTAACCAGGTTGGCTCTGACTCAG
Seq C2 exon
GTTTGGTGAGAAGGAAGCCTACATGGTCTTTATGAATAGCTTCCTGGAAGATCATGGACCGGCCATGCGACACTTCCTGGATCAGGTAGCTATGGTGGACACAGATACCACACCCAGTGGCTACCAGGGAAGTGGAGACCTGGCCCTCCAGTTGGCAGTTCTTCATGTCCAGCTCTGCACAATCTTTGCTGAACTTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006167:ENSRNOT00000066722:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PD(44.2=95.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGCCAGAACTCTTACAC
R:
TGGGTGTGGTATCTGTGTCCA
Band lengths:
177-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]