DreINT0124810 @ danRer10
Intron Retention
Gene
ENSDARG00000089933 | rasal3
Description
RAS protein activator like 3 [Source:ZFIN;Acc:ZDB-GENE-101130-3]
Coordinates
chr6:8238715-8239246:-
Coord C1 exon
chr6:8239010-8239246
Coord A exon
chr6:8238917-8239009
Coord C2 exon
chr6:8238715-8238916
Length
93 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGT
5' ss Score
8
3' ss Seq
TTCATCTCAATGTCCACCAGGTT
3' ss Score
7.59
Exon sequences
Seq C1 exon
GTCATTCCCCGCAGAGCTGAATGACATATTTTCCAGTTGGGTATCAGATTGTGAGGATCGAGGTCAACAGGACATTGGACAACGTCTTATATCAGCATCTCTGTTCCTTCGATTCTTATGCCCAGCGATCCTCAGTCCATCACTCTTTGGCCTTACCCAACCCTATCCAGAGACAAACACCCTTCGCACTCTTACTTTAACAGCCAAAGTCATTCAAAACCTTGCAAACTTCACCTT
Seq A exon
GTAAGTCATATTTGATCTGAATTTACTTTTTGTATGGTTTGCTCTCTTGTAATTAGCATAATTACATTACCATTTCATCTCAATGTCCACCAG
Seq C2 exon
GTTTGGTGAAAAAGAGGAGTACATGTTTTTCATGAATGACTTTCTAACACAACACTGGGAGCCTATGCGAGACTTCTTACAGAAAGTCTCTAATCCAGAGAGCGAAATCACCATGTCTCGATTTGACGGCTATGTAGACCTGCCTCTTCGTCTAGCTGTCCTTCACAATCTCCTGGTTGATATTATATCTGTCATGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089933:ENSDART00000124643:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PD(44.2=95.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTTGGCCTTACCCAACCC
R:
AGAAGTCTCGCATAGGCTCCC
Band lengths:
172-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]