HsaINT0137719 @ hg19
Intron Retention
Gene
ENSG00000105122 | RASAL3
Description
RAS protein activator like 3 [Source:HGNC Symbol;Acc:26129]
Coordinates
chr19:15565172-15565704:-
Coord C1 exon
chr19:15565468-15565704
Coord A exon
chr19:15565374-15565467
Coord C2 exon
chr19:15565172-15565373
Length
94 bp
Sequences
Splice sites
5' ss Seq
CCCGTAGGT
5' ss Score
4.85
3' ss Seq
CCAGCCTGGCCCTGATCCAGGTT
3' ss Score
4.16
Exon sequences
Seq C1 exon
CTGGTTCCCTGCGGAGCTGGGCATCGTGTTCTCAAGCTGGCGAGAAGCATGTAAAGAACGTGGCTCTGAGGTGCTGGGCCCCCGACTGGTGTGCGCCTCCCTCTTCCTGCGGCTCCTGTGCCCTGCCATCCTGGCACCCAGCCTCTTTGGTTTGGCACCAGACCATCCAGCACCCGGCCCAGCCCGCACCCTCACACTGATTGCCAAGGTCATCCAGAACCTCGCCAACCGTGCCCC
Seq A exon
GTAGGTGCTGGGAAGCTAGGGGTGGGGGGACCATGCTGGGAGTGTGGGGGTGGCAGGTGCCTGACCTGACCCACCCAGCCTGGCCCTGATCCAG
Seq C2 exon
GTTCGGTGAGAAGGAGGCCTACATGGGCTTCATGAATAGCTTCCTGGAGGAACATGGACCAGCCATGCAATGCTTCCTGGACCAGGTAGCCATGGTGGATGTGGATGCTGCCCCCAGTGGTTACCAGGGCAGTGGTGATCTGGCCCTCCAGTTAGCTGTCCTGCATGCCCAGCTCTGTACAATTTTTGCTGAGCTTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105122-RASAL3:NM_022904:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PD(44.2=95.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGTCATCCAGAACCTCGC
R:
AGATCACCACTGCCCTGGTAA
Band lengths:
174-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)