RnoEX0074230 @ rn6
Exon Skipping
Gene
ENSRNOG00000006167 | Rasal3
Description
RAS protein activator like 3 [Source:RGD Symbol;Acc:1309019]
Coordinates
chr7:14407114-14408573:-
Coord C1 exon
chr7:14408429-14408573
Coord A exon
chr7:14407412-14407648
Coord C2 exon
chr7:14407114-14407315
Length
237 bp
Sequences
Splice sites
3' ss Seq
TATTGCTTCTTCTGCCCCAGCTA
3' ss Score
6.51
5' ss Seq
TCCGTAGGT
5' ss Score
4.86
Exon sequences
Seq C1 exon
GCCAGGTTGTGCGGAGTCTCTGTGCCTCCACCGAGGACTGTGAAGTGGACCCCAGCAAGTGCCCAACACCGGAGCTGCCAAAATGCCAAGCTAGACTGCGAAGCAGTTGTGAGGAGGTTTTTGAAAACATCATCCACTCTTACAA
Seq A exon
CTATTTCCCAGCAGAGCTGGGCACCGTGTTCTCAAATTGGCGGGAAGCATGCAAAGCACGAGGCTCTGAGGCACTGGGCCCCCGGCTGGTGTGTGCTTCTCTCTTCCTAAGGCTCCTATGCCCCGCCATCTTGGCACCTAGCCTCTTTGGCCTGGCACCAGAGCACCCCGCCCCAGGCCCAGCCAGAACTCTTACACTCATCGCCAAGGTCATCCAGAATCTTGCCAACTGTGCTCC
Seq C2 exon
GTTTGGTGAGAAGGAAGCCTACATGGTCTTTATGAATAGCTTCCTGGAAGATCATGGACCGGCCATGCGACACTTCCTGGATCAGGTAGCTATGGTGGACACAGATACCACACCCAGTGGCTACCAGGGAAGTGGAGACCTGGCCCTCCAGTTGGCAGTTCTTCATGTCCAGCTCTGCACAATCTTTGCTGAACTTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006167_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(27.9=100)
A:
PF0061614=RasGAP=PD(44.2=95.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCACCGAGGACTGTGAAGT
R:
GCTGGACATGAAGAACTGCCA
Band lengths:
293-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]