MmuEX6076802 @ mm10
Exon Skipping
Gene
ENSMUSG00000052142 | Rasal3
Description
RAS protein activator like 3 [Source:MGI Symbol;Acc:MGI:2444128]
Coordinates
chr17:32393741-32395219:-
Coord C1 exon
chr17:32395075-32395219
Coord A exon
chr17:32394038-32394274
Coord C2 exon
chr17:32393741-32393942
Length
237 bp
Sequences
Splice sites
3' ss Seq
TATTGCTTCTTCTGCCCCAGCTG
3' ss Score
7.28
5' ss Seq
CCCGTAGGT
5' ss Score
4.85
Exon sequences
Seq C1 exon
GGCAGGTTGTGCGGTGTCTCTGTGCCTCCACTGAGGACTGTGAAGTGGACCCCAGCAAGTGCCCAACACCAGAGCTGCCAAAACACCAAGCTAGACTGCGAGACAGCTGTGAGGAGGTTTTTGAAAACATCATCCATTCTTACAA
Seq A exon
CTGTTTCCCAGCAGAGCTGGGCTCCGTGTTCTCAAGTTGGCGTGAAGCATGCAAAGCACGAGGCTCTGAGGCCCTGGGCCCCCGGCTGGTGTGTGCTTCCCTCTTCCTGAGGCTTTTATGCCCTGCCATCTTGGCACCTAGCCTCTTTGGCCTGGCACCAGAGCACCCAGCCCCAGGCCCAGCCAGAACTCTTACACTCATCGCCAAGGTCATCCAGAACCTCGCCAACTGTGCCCC
Seq C2 exon
GTTTGGTGAGAAGGAAGCCTACATGGCGTTTATGAATAGCTTCCTGGAAGATCATGGACCAGCCATGCAACACTTCCTGGACCAGGTAGCTACGGTGGATGCAGATACCACACCCAGTGGCTACCAGGGAAGTGGAGACCTGGCCCTTCAGTTAGCAGTTCTTCATGTCCAGCTCTGCACAATCTTTGCCGAACTTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052142-'20-23,'20-21,22-23=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.110 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(27.9=100)
A:
PF0061614=RasGAP=PD(44.2=95.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGACTGTGAAGTGGACCC
R:
GCAAAGATTGTGCAGAGCTGG
Band lengths:
303-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types