BtaEX0029760 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011602 | RASAL3
Description
Bos taurus RAS protein activator like 3 (RASAL3), mRNA. [Source:RefSeq mRNA;Acc:NM_001102236]
Coordinates
chr7:8717495-8719278:+
Coord C1 exon
chr7:8717495-8717639
Coord A exon
chr7:8718753-8718989
Coord C2 exon
chr7:8719077-8719278
Length
237 bp
Sequences
Splice sites
3' ss Seq
TATTGCCTCTTCTCTCCCAGCTG
3' ss Score
8.91
5' ss Seq
TCCGTAGGT
5' ss Score
4.86
Exon sequences
Seq C1 exon
GACAGGTCGTGCGGCGTCTCTGTGCCTCCACCGAGGACTGTGAGGTGGACCCCAGTAAATGCCCAGCCTCAGATCTGCCCCAGCACCAGAGCAGACTGCGAAACAGCTGCAAGGAGGTCTTTGAGAACATCATCCACTCCTACAA
Seq A exon
CTGGTTCCCAGCAGAGCTGGGCACTGTGTTCTCAGGCTGGCGAGAAGCATGCAAAGCACGTGGCTCTGAGGCACTGGGGCCCCGACTCGTATGTGCCTCTCTCTTTCTGCGGCTCCTGTGTCCTGCCATTCTGTCACCCAGCCTCTTCGGCCTAGCACTAGAGCACCCGGCACCTGGCCCAGCCCGCACCCTCACACTGATTGCCAAGGTCATCCAGAACCTTGCCAACCGTGCTCC
Seq C2 exon
GTTTGGTGAGAAGGAAGCCTACATGAGCTTCATGAACACCTTTCTGGAGGATCATGGACCTGCCATGCAACATTTCCTGGACCAGGTGGCCACGGTGGATGCAGACACAGCACCCAGTGGTTATCAGGGCAGCAGTGACCTGGCCCTCCAGCTGGCAGTCCTGCATGCCCAGCTCTGTACTATCTTTGCTGAACTTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011602_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(27.9=100)
A:
PF0061614=RasGAP=PD(44.2=95.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGAGGTGGACCCCAGTAA
R:
GATAGTACAGAGCTGGGCATGC
Band lengths:
292-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development