DreEX0060987 @ danRer10
Exon Skipping
Gene
ENSDARG00000089933 | rasal3
Description
RAS protein activator like 3 [Source:ZFIN;Acc:ZDB-GENE-101130-3]
Coordinates
chr6:8238715-8239823:-
Coord C1 exon
chr6:8239679-8239823
Coord A exon
chr6:8239010-8239246
Coord C2 exon
chr6:8238715-8238916
Length
237 bp
Sequences
Splice sites
3' ss Seq
TCTCACCTGCCTGCAAACAGGTC
3' ss Score
9.22
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
GTGACTTTATAGCAAGACTGTACAATGGAGGAGAGAACTGTGAGGTAGACCCGCTAAAATGCTCGCCCTCTGATCTACCAATCAACCAGAGACATCTTAAAGAGACTTGTGAGGATGTTGTGAAAAGAATCACTGACATGCAAGA
Seq A exon
GTCATTCCCCGCAGAGCTGAATGACATATTTTCCAGTTGGGTATCAGATTGTGAGGATCGAGGTCAACAGGACATTGGACAACGTCTTATATCAGCATCTCTGTTCCTTCGATTCTTATGCCCAGCGATCCTCAGTCCATCACTCTTTGGCCTTACCCAACCCTATCCAGAGACAAACACCCTTCGCACTCTTACTTTAACAGCCAAAGTCATTCAAAACCTTGCAAACTTCACCTT
Seq C2 exon
GTTTGGTGAAAAAGAGGAGTACATGTTTTTCATGAATGACTTTCTAACACAACACTGGGAGCCTATGCGAGACTTCTTACAGAAAGTCTCTAATCCAGAGAGCGAAATCACCATGTCTCGATTTGACGGCTATGTAGACCTGCCTCTTCGTCTAGCTGTCCTTCACAATCTCCTGGTTGATATTATATCTGTCATGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089933-'11-14,'11-13,12-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(27.9=100)
A:
PF0061614=RasGAP=PD(44.2=95.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGAGAGAACTGTGAGGT
R:
CCAGGAGATTGTGAAGGACAGC
Band lengths:
296-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]