HsaEX6093608 @ hg19
Exon Skipping
Gene
ENSG00000105122 | RASAL3
Description
RAS protein activator like 3 [Source:HGNC Symbol;Acc:26129]
Coordinates
chr19:15565172-15567059:-
Coord C1 exon
chr19:15566915-15567059
Coord A exon
chr19:15565468-15565704
Coord C2 exon
chr19:15565172-15565373
Length
237 bp
Sequences
Splice sites
3' ss Seq
CATTGCCTCTTCTGCACCAGCTG
3' ss Score
5.96
5' ss Seq
CCCGTAGGT
5' ss Score
4.85
Exon sequences
Seq C1 exon
GACAGGTTGTGCGGCGTCTCTGTGCTTCTACTGAGGACTGTGAAGTGGACCCCAGCAAATGTCCAGCCTCGGAGCTGCCAGAGCACCAGGCCAGACTTCGGAACAGCTGCGAGGAGGTCTTCGAAACCATTATCCATTCCTACGA
Seq A exon
CTGGTTCCCTGCGGAGCTGGGCATCGTGTTCTCAAGCTGGCGAGAAGCATGTAAAGAACGTGGCTCTGAGGTGCTGGGCCCCCGACTGGTGTGCGCCTCCCTCTTCCTGCGGCTCCTGTGCCCTGCCATCCTGGCACCCAGCCTCTTTGGTTTGGCACCAGACCATCCAGCACCCGGCCCAGCCCGCACCCTCACACTGATTGCCAAGGTCATCCAGAACCTCGCCAACCGTGCCCC
Seq C2 exon
GTTCGGTGAGAAGGAGGCCTACATGGGCTTCATGAATAGCTTCCTGGAGGAACATGGACCAGCCATGCAATGCTTCCTGGACCAGGTAGCCATGGTGGATGTGGATGCTGCCCCCAGTGGTTACCAGGGCAGTGGTGATCTGGCCCTCCAGTTAGCTGTCCTGCATGCCCAGCTCTGTACAATTTTTGCTGAGCTTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105122-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(27.9=100)
A:
PF0061614=RasGAP=PD(44.2=95.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGACTGTGAAGTGGACCC
R:
ATTGTACAGAGCTGGGCATGC
Band lengths:
297-534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)