GgaEX1048336 @ galGal3
Exon Skipping
Gene
ENSGALG00000004323 | RASAL2
Description
NA
Coordinates
chr8:6770071-6772201:-
Coord C1 exon
chr8:6772057-6772201
Coord A exon
chr8:6770940-6771176
Coord C2 exon
chr8:6770071-6770272
Length
237 bp
Sequences
Splice sites
3' ss Seq
CCTTGTTTATTCTTTCTCAGCGT
3' ss Score
8.87
5' ss Seq
TAAGTAGGT
5' ss Score
4.16
Exon sequences
Seq C1 exon
GGGAGTTTATCAAGGCTTTGTATGAGTCAGATGAAAACTGTGAAGTGGACCCCAGCAAATGTTCATCCAGTGAATTAACAGACCATCAGAGCAACCTGAAAATGTGTTGTGAGCTGGCCTTCTGCAAGATTATCAATTCCTACTG
Seq A exon
CGTGTTCCCTCGTGAGCTGAAGGAGGTGTTTGCATCTTGGAAGCAGCAGTGCCTGAGCAGGGGCAAGCAGGACATCAGCGAGCGGCTGATCAGTGCCTCCCTGTTCCTCCGCTTCCTGTGCCCCGCCATCATGTCCCCCAGCCTCTTCAGCCTCATGCAGGAGTATCCTGACGACCGGACATCGCGCACGCTCACACTCATTGCTAAAGTCATTCAGAATCTCGCCAATTTTGCTAA
Seq C2 exon
GTTTGGTAACAAGGAAGAGTACATGGCTTTCATGAACGACTTTCTGGAACATGAGTGGGGGGGAATGAAGCGATTTCTCCTGGAGATCTCTAATCCAGATACCATCTCAAACATGCCTGGATTTGAGGGCTATATCGACCTGGGCAGAGAGCTCTCAGTTTTGCATTCCCTCTTATGGGAGGTTGTGTCCCAACTTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004323-'13-10,'13-9,14-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(27.9=100)
A:
PF0061614=RasGAP=PD(44.2=95.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACCCCAGCAAATGTTCA
R:
GGGACACAACCTCCCATAAGAG
Band lengths:
292-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]