MmuEX6028514 @ mm10
Exon Skipping
Gene
ENSMUSG00000070565 | Rasal2
Description
RAS protein activator like 2 [Source:MGI Symbol;Acc:MGI:2443881]
Coordinates
chr1:157161125-157164751:-
Coord C1 exon
chr1:157164607-157164751
Coord A exon
chr1:157163703-157163939
Coord C2 exon
chr1:157161125-157161326
Length
237 bp
Sequences
Splice sites
3' ss Seq
ATGTTTTCCCTTTTCTGTAGTGT
3' ss Score
8.74
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
GGGAGTTCATCAAAGCCTTGTATGAATCAGATGAGAACTGTGAAGTGGATCCCAGCAAGTGTTCATCTAGTGAACTGATGGACCATCAGAGCAACCTGAAAATGTGCTGTGAGTTGGCTTTCTGCAAGATCATCAACTCATACTG
Seq A exon
TGTCTTCCCGCGTGAGTTGAAAGAAGTGTTTGCATCATGGAAGCAGCAGTGCCTGAACCGAGGCAAGCAAGACATCAGTGAGCGGCTCATCAGTGCCTCATTGTTTCTCCGTTTTCTTTGCCCAGCCATTATGTCTCCCAGTCTTTTCAACCTGATGCAGGAATATCCTGATGACCGCACATCTCGGACACTAACTCTTATTGCCAAGGTCATTCAGAACCTGGCCAACTTTGCCAA
Seq C2 exon
GTTTGGTAACAAAGAGGAGTACATGGCATTCATGAATGATTTTTTAGAACATGAATGGGGTGGAATGAAGCGGTTCCTTTTGGAGATCTCTAATCCTGACACCATCTCAAACACCCCAGGCTTCGATGGTTACATTGATTTGGGCAGAGAGCTGTCAGTTTTGCATTCCTTACTATGGGAAGTAGTTTCCCAACTTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070565-'36-31,'36-29,37-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(27.9=100)
A:
PF0061614=RasGAP=PD(44.2=95.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGTTCATCAAAGCCTTGT
R:
AAAACTGACAGCTCTCTGCCC
Band lengths:
307-544
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types