RnoEX6044908 @ rn6
Exon Skipping
Gene
ENSRNOG00000004917 | Rasal2
Description
RAS protein activator like 2 [Source:RGD Symbol;Acc:1307566]
Coordinates
chr13:74799224-74804081:-
Coord C1 exon
chr13:74803937-74804081
Coord A exon
chr13:74802980-74803216
Coord C2 exon
chr13:74799224-74799425
Length
237 bp
Sequences
Splice sites
3' ss Seq
GTCTTTTCCATTTTCTGTAGTGT
3' ss Score
8.16
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
GGGAGTTCATCAAAGCCTTGTACGAGTCAGACGAGAACTGTGAGGTGGACCCCAGCAAGTGCTCGTCCAGCGAGCTGACGGACCATCAGAGCAACCTGAGGATGTGCTGCGAGCTGGCTTTCTGCAAGATCATCAACTCATACTG
Seq A exon
TGTCTTCCCTCGTGAGTTGAAAGAAGTGTTTGCATCGTGGAAGCAGCAGTGCCTGAACCGAGGCAAGCAAGACCTCAGCGAGCGGCTCATCAGTGCCTCATTGTTTCTCCGTTTTCTTTGCCCAGCCATTATGTCTCCCAGTCTTTTCAACCTGATGCAGGAGTATCCTGATGACCGCACATCTCGGACACTAACTCTTATTGCCAAGGTCATTCAGAACCTGGCCAACTTTGCCAA
Seq C2 exon
GTTTGGTAACAAAGAGGAATACATGGCATTCATGAATGATTTTTTAGAACATGAATGGGGTGGAATGAAGCGGTTCCTTTTGGAGATCTCAAATCCTGACACCATCTCAAACACCCCAGGCTTCGATGGCTACATTGATTTGGGCAGAGAGCTGTCAGTTTTACATTCCTTGCTTTGGGAAGTAGTTTCCCAACTGGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004917-'25-22,'25-19,26-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(27.9=100)
A:
PF0061614=RasGAP=PD(44.2=95.0)
C2:
PF0061614=RasGAP=PD(4.0=7.1)
Main Skipping Isoform:
ENSRNOT00000033324fB12185
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTTGTACGAGTCAGACGA
R:
AAAACTGACAGCTCTCTGCCC
Band lengths:
294-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]