BtaEX6069980 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015537 | RASAL2
Description
RAS protein activator like 2 [Source:HGNC Symbol;Acc:HGNC:9874]
Coordinates
chr16:61288809-61291703:+
Coord C1 exon
chr16:61288809-61288953
Coord A exon
chr16:61289586-61289822
Coord C2 exon
chr16:61291502-61291703
Length
237 bp
Sequences
Splice sites
3' ss Seq
GGTCTTTCTTTCTTCCCCAGTGT
3' ss Score
9.18
5' ss Seq
CAAGTAGGC
5' ss Score
5.3
Exon sequences
Seq C1 exon
GGGAGTTCATCAAAGCGTTGTATGAGTCAGATGAAAACTGTGAAGTGGATCCCAGCAAATGTTCATCCAGTGAACTTCTGGACCATCAGAGCAACCTGAAAATGTGCTGTGAGCTGGCTTTCTGCAAGATCATCAACTCTTACTG
Seq A exon
TGTTTTTCCTCGTGAGCTGAAAGAAGTGTTTGCATCCTGGAAGCAGCAGTGCCTGAACCGCGGCAAGCAGGACATCAGCGAGAGGCTCATCAGCGCCTCGCTGTTTCTCCGTTTTCTGTGCCCGGCCATCATGTCTCCCAGTCTCTTCAACCTCATGCAGGAGTATCCTGATGACCGCACATCTCGGACTCTGACTCTCATTGCCAAGGTCATCCAGAACCTGGCCAACTTTGCCAA
Seq C2 exon
ATTTGGTAACAAGGAGGAATACATGGCATTCATGAATGATTTTTTAGAACATGAATGGGGTGGAATGAAGCGCTTTCTTTTGGAGATCTCTAATCCAGACACCATCTCAAACACCCCAGGCTTTGATGGTTACATTGATCTGGGCCGAGAGCTTTCAGTTTTGCATTCCTTACTATGGGAAGTAGTTTCCCAACTTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015537-'14-16,'14-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(27.9=100)
A:
PF0061614=RasGAP=PD(44.2=95.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGTTCATCAAAGCGTTGT
R:
AAAACTGAAAGCTCTCGGCCC
Band lengths:
307-544
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]