DreEX0060980 @ danRer10
Exon Skipping
Gene
ENSDARG00000036257 | rasal2
Description
RAS protein activator like 2 [Source:ZFIN;Acc:ZDB-GENE-070912-180]
Coordinates
chr2:35855994-35857341:+
Coord C1 exon
chr2:35855994-35856138
Coord A exon
chr2:35856695-35856931
Coord C2 exon
chr2:35857140-35857341
Length
237 bp
Sequences
Splice sites
3' ss Seq
TTCAACTGTAATCCGGCCAGTGT
3' ss Score
3.99
5' ss Seq
CAAGTATGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GGGAGTTTATTAAAGCCCTGTACGAGTCGGATGAAAATTGTGAAGTAGACCAATCAAAGTGCACCAGCAACGAGCTTCCAGAGCATCAGAGTAACCTGAAGATGTGCTGCGAACTGGCCTTCTGCAAGATCATCAACTCTTATTG
Seq A exon
TGTTTTTCCACGTGAACTGAAGGAGGTCTTTGCATCATGGAAGCAGCAGTGTCACGCTCGAGGGAAGCAGGACATCAGTCAGCGTCTTATCAGCGCATCGCTCTTCCTGCGCTTTCTGTGTCCTGCCATCATGTCCCCGTCACTCTTTGGTCTCATGCAGGAATATCCAGATGACCGTACTTCTCGAACACTCACCCTCATTGCCAAAGTCATTCAGAATCTTGCTAACTTTGCCAA
Seq C2 exon
ATTCGGGAACAAAGAGGAGTACATGGCTTTCATGAATGACTTTCTAGAGCACGAGTGGGCTGGTATGACCCGTTTTCTGCTTGAGATCTCGAATCTTGAGACAATCTCCAACACCCCGGGCTTTGAGGGCTACATTGACCTGGGCCGGGAGCTGTCAGTGCTTCACTCGCTGCTCTGGGAGGTGGTGTCTCAGCTGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036257-'17-16,'17-15,18-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(27.9=100),PF067666=Hydrophobin_2=PU(46.9=46.9)
A:
PF0061614=RasGAP=PD(44.2=95.0),PF067666=Hydrophobin_2=PD(51.0=31.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCCCTGTACGAGTCGGAT
R:
GAGTGAAGCACTGACAGCTCC
Band lengths:
302-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]