BtaINT0122634 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011602 | RASAL3
Description
Bos taurus RAS protein activator like 3 (RASAL3), mRNA. [Source:RefSeq mRNA;Acc:NM_001102236]
Coordinates
chr7:8719384-8720928:+
Coord C1 exon
chr7:8719384-8719502
Coord A exon
chr7:8719503-8720537
Coord C2 exon
chr7:8720538-8720928
Length
1035 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCT
5' ss Score
7.33
3' ss Seq
GCTCCCCATCCCACCCCCAGCAT
3' ss Score
6.45
Exon sequences
Seq C1 exon
GCCACCCGGGACAACCTGGAACCGCTGCCCACTATCCTGCATGCCATCGAAGAGGGCCGACCTGTACCTGTGACTGTGCCAATGTGTCTCCCAGCACCCCGCACCCAGGGCCATTCCAG
Seq A exon
GTATCTACTTGCCTCAAGTCTGACCTGATCCAGTTCTGATGGGTGGGAGTGGGGGAAGGGCCAAAGGCATGCACAGGGTCAGAGGTGAAGACAGGATCATGTCAGGGATCAGAGACAGGGTCATGTTCATCATCAGAGACATTGTAGGATGGAGGTCAGAGGCTAGAGACAGGGTCATCTTGGGGGTCAGGGAGAGGCTCACAGTGCCATCAGAGAGGGGGGGCATCAGGTCAGATTGGACTCTGAGGTGGGGATTAGGCATTGCAGAGAGAGGGTCAGAGAAATGTCTAGGGTCAGAGAAAGTGACATTGTCACTTTCAGCAATGAGGGGCAGATCTCAGGTCAGGCCCAGGGGGAGATGGGGTCAAAGTTTATGGGCAGAGTCATTTTGGGGGTCAGAAGTCAGGGATCGTGTTCTTTCAGAAGGCAGAGACAGGTTCAGTTGAAGGTCAGAGGTTGGGGACAAGAGGGAGTCAGATTGGGAAGGAAGAGGGTAGAGTTTTGAGCACAGGTCAAGCTCCAGGGGGCTTCCCAGGTGGTGCTAGTGGTAAAGAACCTGCTTGCCAATTCAGGAGATGTAAGAGATGCAGGTTTGACCCCTGGGTTGGGAAGATTCTCTGAAGGAGGTCATGAGAACCCACTCCGGTATTCTTGACTGGAGAATCCCATGGACAGAGGAGCCTGGTGGGCTACAGTCCTTAGGACTGCAAAGAGTCAGGCAGGACTGAAGTGATTTAGCATGCAGACAAGCTCCGGCAGATTGGAAGTAGAGATTACACAGAGGCTCAAGTCAAGGGTAACACTGTGTCAGAGCTCCGGGACAAGGCTAGAGAGGAATCAAAGATTAGATTGAGGTCATAGAAGGGACAGTATTATCGGAAGTCCAGGACAGGATCAGAAGTCAAAATGGGATCCCTTCAGTCACAGGGCTTGCAGAGAAGTAAAAGATCAGGGGTGGAGTTATTTCTGGTGGAAGGTAGAGGTGGGGTCAGCTCAGAAACCGGTGGAAGTCTGAGCTCCCCATCCCACCCCCAG
Seq C2 exon
CATCTCTGCAGGGGAGAAGCCTGGCTTTCTGGCCCCCCGCGACCTCCCCAAGCACACCCCTCTCATCTCCAAGAGTCAGTCCCTGCGCAGCGTTCACGGCGCAGGTAGTTGGGCCCGGCCGCGGCTGGAGGAGGAACAGCCCCCTCGGCTGCCTCGGCCGGTAAAGCGCACTCAGAGTGTCCCGGCTGGCCGCCCCGCTCGCCGCCGCCCGTCTGCCGGACCGCGGCCGCGACCCAAAGGCTCCCTACACGCGGGACCCGCGCCCCGCGGCCGGCCCTGGACTGGAGCCTCAGCATCGCTGCCTCGGAAGCCGTCGGTGCCCTGGCAGCGCCAGATGGACCAGCCAAGAGACAAAGACCAGGCGCTGGGCACCCACCGACCCGTGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011602:ENSBTAT00000015416:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.700 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF045137=Baculo_PEP_C=PU(2.0=1.5),PF138631=DUF4200=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTGACTGTGCCAATGTGT
R:
GATGCTGAGGCTCCAGTCCAG
Band lengths:
350-1385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]