HsaINT0137721 @ hg19
Intron Retention
Gene
ENSG00000105122 | RASAL3
Description
RAS protein activator like 3 [Source:HGNC Symbol;Acc:26129]
Coordinates
chr19:15563918-15565078:-
Coord C1 exon
chr19:15564960-15565078
Coord A exon
chr19:15564309-15564959
Coord C2 exon
chr19:15563918-15564308
Length
651 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
ATCCTCCATCCCACCCCTAGCCT
3' ss Score
6.71
Exon sequences
Seq C1 exon
ACAACCCGAGACACCCTGGAACCACTGCCCACCATCCTGCGAGCCATTGAGGAGGGCCAGCCTGTGCTTGTGTCAGTGCCAATGCGTCTCCCACTGCCCCCGGCCCAGGTCCACTCCAG
Seq A exon
GTAACCTCAAGTCTGGTCTGGGGTCTGATGGGTGGGAACAGGAAGGAGCAGGGCTCAGACAGGGGTCAGAGGTGAAGTTGGATCATTGTGAGCAGAGGTCAAGCCCAGGGTCAGACGGGAATCACAGGTTATAGAAAGGGTTGGGTCAAAGGTCACAGTGTGTTTGAGGTCGGGGATGAGAGGAGAGGTTAGGGTGGAGAGATGTCAAGGGTCATAGAGAGGACAGTATTATAGTCAGAAGTCAAGGACAGGAGCCAGGCTCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGAGGATCACTTGAGGCCAGGAACTTAAGACAAGCCTGGGCAACATAGGGAGACCCCATCTCTACCAAAAAAAAAAAAAATTACCTGGGTATAGTGGCATGTGCTGGTAGTCCTAGATATTTGGGAGGCTGAGGCTGGGGAATAGCTTGAGCTCCAGAATTCAAGGCTGCAGTGAGCTATGATCTAGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACCTTGTCTCAAAAAAAAAAAAGAAAGGACAAGTTCACGTGGGGGGTGAGGTCACTTCTGGTCAGGTCGGGATGGGGTCGTCTCAGGGGCCAGTGGAGGGTCTAAGATCCTCCATCCCACCCCTAG
Seq C2 exon
CCTCTCCGCAGGGGAGAAGCCCGGCTTCCTGGCCCCCCGGGACCTCCCCAAGCACACCCCTCTCATCTCCAAGAGCCAGTCTCTGCGCAGCGTTCGCCGCTCAGAGAGTTGGGCCCGGCCACGGCCGGACGAAGAGCGGCCCCTGCGGCGGCCCCGGCCGGTGCAGCGCACGCAGAGTGTCCCGGTCCGGCGTCCTGCCCGCCGCCGCCAATCTGCGGGGCCCTGGCCGCGACCCAAAGGCTCCCTGAGCATGGGACCAGCGCCCCGCGCCCGGCCTTGGACCCGGGACTCCGCCTCGCTGCCTCGGAAGCCGTCGGTACCCTGGCAGCGCCAAATGGACCAGCCGCAAGACCGAAACCAGGCACTGGGCACGCACCGACCTGTGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105122-RASAL3:NM_022904:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.425 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF045827=Reo_sigmaC=PU(11.3=9.9),PF101864=Atg14=PU(17.5=16.0),PF123293=TMF_DNA_bd=PU(2.9=1.5),PF104824=CtIP_N=PU(5.8=4.6),PF154501=DUF4631=PU(11.5=9.9),PF082327=Striatin=PU(1.9=1.5),PF041569=IncA=PU(22.9=22.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCTGCGAGCCATTGAGG
R:
CTGGTCCCATGCTCAGGGAG
Band lengths:
347-998
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)