MmuINT0132053 @ mm9
Intron Retention
Gene
ENSMUSG00000052142 | Rasal3
Description
RAS protein activator like 3 [Source:MGI Symbol;Acc:MGI:2444128]
Coordinates
chr17:32529343-32530586:-
Coord C1 exon
chr17:32530468-32530586
Coord A exon
chr17:32529734-32530467
Coord C2 exon
chr17:32529343-32529733
Length
734 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
CTTTCACATCCCACCTCCAGCTT
3' ss Score
7.87
Exon sequences
Seq C1 exon
AAAACCCAAGATAGCTTGGAACCACTACCCACCATCCTTCGAGCCATTGAGGAAGGCCGGCCTGTCCCAGTGTCTGTACCAATGCGTCTTCCCCGGATCTCCACTCAGGTCCAATCCAG
Seq A exon
GTACCCTCAAATCCAGCCTGTGTTCTCATGGGTGGCAGAAGAAGTAAATATGTTAAGATAAATAATGGCAGGGGCAGGATCATGTTGAGGTCAGAGGCTGGGAATGGCATTACATAAGGAGGCAGGCAGAGGAGGGGCCCACTGTGTGGTCACATAGCCAGAGTTCAAGATTGGGATGGAGTCATGTCAGAGGTCAGGGAAGAGTTACCTCCAGGGTCAGAGAAAGTAGCCTTGTGGTAAAAGATGAAAGCCATGTGTCAGAGTCTGTGGATGGGGTCAAATCAGGGGTCAGGTGGAGACAAGATGTTAGGAAGGTCAGAGGAGCAGAGGTCAAGCTTAGGGCAATAGGACTGACTAGTCATGGGACCACAGGTTAGAAACCATTTCCTATCAGAAGTCAAGAACAACAGCATCAGCTCAAGTCCAGAGGTTGGAGAGAAGATAAGGTCGATTAGGGAAAAAGTGGTTACCCTTGTGAGCAGAGGCCGATGCCCTGGGCTCAGATGGAAATCAAATTATTGAAAGGATCGGACCAAGGTCAGAAGTCAGAGCCAAAGCTAGAGAGGGGAAAAAGATTAGATTGGGATAGAAGTCAAGGACAGGGTCTCATCAAAGTCATAGGTCAATTCTTGTCCTAAGAGGATTCTAAAGGTGGGGTTGTTTCTGGCTCTAGGCTGGGGTGGGGTCGTCTCCAGAGCCAACTGAAGGTCTGAACTTTCACATCCCACCTCCAG
Seq C2 exon
CTTCTTTTCAGGGGAGAAACCCGGCTTCCTGGCACCCCGAGACCTCCCCAAGCACACTCCCCTCATTTCCAAGAGTCAATCTCTGCGCAGCTTTCAAGGGGCAGGAAGCTGGGCCAGTCGGCGGCCAGATGAGGAGCGGCCCCAGAGGCGGCCGCGGCCAGTGCTGCGCACACAGAGCGTCCCTGCCAGACGTCCTACCCACCGTCGCCCTTCTGCAGGTTCCAAGCCGCGGCCCAAAGGCTCCCTACGCATGGGCCCCGCGCCTTGCGGACGGGCCTGGACTAGGGCTTCTGCCTCGCTACCTCGGAAGCCATCGGTACCATGGCAGCGCCAAATGGACCAGCCGGGGGACCGATACCAAACTACGGGAACGCACCGACCAGTGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052142-Rasal3:NM_178785:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.425 A=NA C2=0.924
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGATCTCCACTCAGGTCCAA
R:
TACCGATGGCTTCCGAGGTAG
Band lengths:
345-1079
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: