RnoINT0124516 @ rn6
Intron Retention
Gene
ENSRNOG00000006167 | Rasal3
Description
RAS protein activator like 3 [Source:RGD Symbol;Acc:1309019]
Coordinates
chr7:14405759-14407022:-
Coord C1 exon
chr7:14406904-14407022
Coord A exon
chr7:14406150-14406903
Coord C2 exon
chr7:14405759-14406149
Length
754 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCT
5' ss Score
7.33
3' ss Seq
TTTTTCCATCGCACCTCCAGCTT
3' ss Score
7.46
Exon sequences
Seq C1 exon
AAAACTCGAGACAGCTTGGAACCACTACCCACCATCCTTCAAGCCATTGAGGAGGGTCGGCCTGTCCCAGTGTCTGTACCAATGCGTCTTCCCCTGAACACTGCTCATGTCCAATCCAG
Seq A exon
GTATCTTCAAACCTTGCCTGTGTTCTCATGGGTGGCAGAAGGAGTTCAGGTGTTAAGATGAAGGACACCAGGGGCAGGACCACGTTGAGGTCAGAGGCTGGGGACGTAAGGAGGCAGGCAGAGGGGTGGACCACTGTGTGGTCAAAGGTCAAACATCTACAGAGCCAGAGTTCAAGATTGGGATGGAGTCATGTCAGAAGTCAGGGAAGAGTCACCTCCAGGGTCAGAGGAAGTAGCCTTGTGGTAAAAGGTGAAGGCCATGTGTCAGAGTCTGTGGATGGGGTCTAATCATGGGTCAGGTGGAGACAAGATGTTATGAAGGTCAGTGAAGGAGAAGTCAAGCTTAGGGAAAATAGGACGAGTCATGGGGCCAAGGTTAGAGATCATTTCCTATCAAAAGTCAAGAACAACCGGGTCAGCTCAAGCCCAGAGGTTGGAGAGAAGATAAGGTCAATTAGGAAAAAAGTGGGTACCCTTGTGAGCAGAGGCTGACTGCCCTGGGGTCAGACTGGAATCAAAATTATTGAAAGAATCAGGTCAAGTCAGAAGTCAGAGCCAAAGCTAGAGAGGAGGGGGAAAAAGATTAGATCGGGATAGTAGTCAGAAGTCAAAAACAGGGTCTTAGCAAATCAGAGGTCAATTCTGGTCCTAAGAGAATTCCACTGATGTAAAAGTGGGGTCGTTTCTGGCTCTAGGCTGGGGTGGAGTCATCTCCCTCAACTGAGGGTCTGAACTTTTTCCATCGCACCTCCAG
Seq C2 exon
CTTCTCTTCAGGGGAGAAACCCGGCTTCCTGGCACCCCGAGACCTCCCCAAGCACACTCCTCTCATTTCCAAGAGCCAGTCTTTGCGCAGCTTTCAAGGGGCAGGAAGCTGGGCCCGTCGGCGGCCAGATGGGGAGCGGCCCCAGCGGCGGCCGCGGCCAGTGCTGCGCACACAGAGCGTCCCTGCCAGACGCCCTACCCACCATCGCCCTGCTGCGGGTTCCAAGCCTCGACCCAAAGGCTCTCTACGCACTGGTCCTGCGACTTCCGGACGGGCCTGGGCTAGGACTTCCACCTCTCTACCTCGGAAGCCATCGGTGCCTTGGCAGCGCCAACTGGACCAGCCCGGGGACCGATACCAAACTCCGGGAACGCACCGACCAGTGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006167:ENSRNOT00000066722:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.550 A=NA C2=0.992
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF045827=Reo_sigmaC=PU(4.7=3.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCCACCATCCTTCAAGCCA
R:
CAGTGCGTAGAGAGCCTTTGG
Band lengths:
348-1102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]