BtaINT0122637 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011602 | RASAL3
Description
Bos taurus RAS protein activator like 3 (RASAL3), mRNA. [Source:RefSeq mRNA;Acc:NM_001102236]
Coordinates
chr7:8721865-8722572:+
Coord C1 exon
chr7:8721865-8721928
Coord A exon
chr7:8721929-8722034
Coord C2 exon
chr7:8722035-8722572
Length
106 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
TACTGCCGCTGCCTCCCCAGGAG
3' ss Score
7.45
Exon sequences
Seq C1 exon
GACCGCGAAGTTGGATCCAGGGCGCGATCGTTCAACCAATGAGGGCCACAGGCTGAAAAGTCTG
Seq A exon
GTGAGACCCATGCCCTAGCCCTGGGACAGATTTAGGCTGGGTGAGGAAACGCGAGTTGGGATGCAACCCTCACCCGGCTCTGAGTCTACTGCCGCTGCCTCCCCAG
Seq C2 exon
GAGTGCCGACTAGCTGAGATAGAGAGTACTCAGGCCCAGCTGAAGGATACCATCCAGAACCTGCAGCTTCTTCCCAGGACATCGGAGTCCCAGAGCCAGCCCGTGCCCCTCAAAGCTCCCTGCATCAACGGAGACACCACTTGAGTTGCCCACTCGGCCCGATGTGCTTTGGGAGCAGAGAGAAAGCCGTCTAAGGGGCCTGTCCACCCCCTGCCTCAAACCCCCGTGGCCTACAGTAGGGAGTGGAGCTGTAGGTACCAAACAGTCTGGCACTATTAGGTTCCCCAGTAAAATCTTGATTTCAGTAAAAATCGATGGTTTTTTTGCCCCTGAATTTTGCCAATCAGAAAGCAAACTCCATCCCCTCAATCCAGCTCTCTCAAACTCTCCCCTAAATTGCAGGTCTCAGGGGAGTGGGGCGATGCAGGGAGATTCTCATGAGCTCTGTGACGTTAGTCCCTCACTTTTCTCAGAGCCTTGATCTCCTCATTTGTAAAATTGATTTAAAGTTCCTTATACAGTAAAAGACCTAGAGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011602:ENSBTAT00000015416:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.660
Domain overlap (PFAM):
C1:
PF045137=Baculo_PEP_C=FE(20.8=100),PF138631=DUF4200=FE(20.8=100)
A:
NA
C2:
PF045137=Baculo_PEP_C=PD(22.8=47.9),PF138631=DUF4200=PD(24.8=52.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCGCGAAGTTGGATCCAG
R:
GGCTTTCTCTCTGCTCCCAAA
Band lengths:
252-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]