MmuINT0132056 @ mm10
Intron Retention
Gene
ENSMUSG00000052142 | Rasal3
Description
RAS protein activator like 3 [Source:MGI Symbol;Acc:MGI:2444128]
Coordinates
chr17:32390659-32391399:-
Coord C1 exon
chr17:32391336-32391399
Coord A exon
chr17:32391236-32391335
Coord C2 exon
chr17:32390659-32391235
Length
100 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
CACTTCCACTGCCTTCCCAGGAA
3' ss Score
7.02
Exon sequences
Seq C1 exon
TATCTCAAAGTTGGATTCTAAGGGTGGTCTCCCAAGCAACGGAAGCCACAGGCTGAAAAGTCTG
Seq A exon
GTAAGACTCTTGCCTGAGACTGGAGGGGAGTAGGGAGTGTGCTTGGTATATACCCCCAACCTTCACCCCAACCTCAAACCCACTTCCACTGCCTTCCCAG
Seq C2 exon
GAACAGCGCCTGACTGAGATGGAATGTTCTCAGGACCAGCTGAGGGATAGCCTCCAAAGCCTGCAACTTCTTTCAAAAACACCAGGATCTCGGAGCCAGCCCCTGCCTCTCAAAGCACCATGTGTCAATGGAGCTGATCTGTCAATGGGCACTTGAGCATTTCACCCCACTCCATATATGGTCTGGAAGCCAAGAGAGCCACTACAGAGGATTTTCTGACTGCCTCAGCCCTTCATGGCCTTCAGTGGGGGACAGAGTGGGAGGTGTCAATCACTCTGGTAACTGTGAGGTTGCCCAGTAAATCCATTTCAGAAAATCACCGGTTTCTCTGCCCCTACAAATGATTAATACAAGAGAATGCCCAGTTCTCCATTCAGGTCTCCCAAATTCATACCTAATTTGAAGTCTCCTGAAGTTGGAAATAATGAGCAGATCCTCACAATTGGTGTGATCTAAGGTTGTCACTTTAAGAGACTCCATTCTCTCCTCTGTAAAGTGTATCTAAAAATTCTCCACATAGTGGAAAACTCTTAGTTAAAGGTATTCAATAAAGGGTATTGATCATTTTTGGGGGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052142:ENSMUST00000063824:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.773 A=NA C2=0.412
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTCCCAAGCAACGGAAG
R:
TAGTGGCTCTCTTGGCTTCCA
Band lengths:
243-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types