RnoINT0124519 @ rn6
Intron Retention
Gene
ENSRNOG00000006167 | Rasal3
Description
RAS protein activator like 3 [Source:RGD Symbol;Acc:1309019]
Coordinates
chr7:14403592-14404777:-
Coord C1 exon
chr7:14404714-14404777
Coord A exon
chr7:14404614-14404713
Coord C2 exon
chr7:14403592-14404613
Length
100 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
CACTTTTACTGCCTTCCCAGGAG
3' ss Score
6.73
Exon sequences
Seq C1 exon
GATCTCAAAGTTGGATTCTAAGGGTGGTCTCCCAAGCAACGGTAGCCTCGGGCTGAAAAGTCTG
Seq A exon
GTAAGAATCTTGTCTGAGACTGGAGAGAAGTGGGGAGTCTGCTTGGCAAACACTCCCAACTCCCACCCCAACCTCAAACCCACTTTTACTGCCTTCCCAG
Seq C2 exon
GAGCACCGCATGACTGAGATGGAATGTTCTCAGAACCAGCTGAGGGATACCCTCCAAAGCCTACAGCTTCTTTCAAAAACTCCAGGATCTCGGAGCCAGCCCCCGCCTCTCAAAGCACCATGTGTCAATGGAGCTGATCTGTCGATGGGCACCTGAGTATTTCACCCCACTCCATACAGTCTGGAAGCCAGGAGAGCCACTACAGAGGATTTTCTGACTACCTCAGTCCTTCATGGCCCTTAGTAGGGGACAGAGTGGGAGGTGTCAATCACTCTGGTAACTGTGAGGTTGCCCAGTAAATCTCCATTTCAGAAAATCACTGGTTTCTCTGCCCCTACAAAGATTAATGCAAGAGCATACCCAGTTCTCTACTCAGCTCCCCCAAATTCTTACCTAATTTGAAGTCTCCCGAAGATGAAAATGATTAGCAAAATTGTCCTCACTATTGGTGTGATCTAAGGTCATCACTCTAAAAGACTCCATTCTCTCTTCTGTATCTAAAAATTCTCTGCATAGTTAAAGGTATTCAATAAAAGGTATTTATCATTGTTGTGGGAACCACCTGCTTTTCCATGATGCACAGATCTCCCGCCCACCTATCCCACCTCATCCCCTGCCAATACCTCAAGTTCTGAGTGACAGAATCTTTCTAGACTTTGTCTAGAAAGACAATGCAGGTACCTTTATGGCAGGGAGAGCAATGGGTCTGAGAGGCAGATGAAGGAACGGACTGTGCATGAGAACACGGTTGAGTTCTATGGCTGGTTGAGTAAGGTGGATGAACCAATAGGCAGGTGACTAGGTTAGCTAATTCACTGAACATTTGACCTGCTGTAAGGCAGATCATGAATCAAAATAGACAGGTCTACTTAGAGAAGGCTGACACAAAATAGGAAATTAACACTTGAACTAAATGAGTAAACACGCACACACACACACACACACACACACACACACACACACACACACACACACCTCACGTTTATCGAGGTCTTTTGGGACTCCCAAATGAGTCATGGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006167:ENSRNOT00000066722:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.955 A=NA C2=0.843
Domain overlap (PFAM):
C1:
PF045827=Reo_sigmaC=FE(19.8=100)
A:
NA
C2:
PF045827=Reo_sigmaC=PD(23.6=48.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCCCAAGCAACGGTAGC
R:
CCTCTGTAGTGGCTCTCCTGG
Band lengths:
246-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]