HsaINT0137724 @ hg19

Intron Retention

Gene

ENSG00000105122 | RASAL3

Description

RAS protein activator like 3 [Source:HGNC Symbol;Acc:26129]

Coordinates

chr19:15562438-15562919:-

Coord C1 exon

chr19:15562856-15562919

Coord A exon

chr19:15562750-15562855

Coord C2 exon

chr19:15562438-15562749

Length

106 bp

Sequences

Splice sites

5' ss Seq

CTGGTGAGA

5' ss Score

7.54

3' ss Seq

CATCACCACTGCCTCCCCAGGAG

3' ss Score

7.06

Exon sequences

Seq C1 exon

GAGCTCAGAGTTTGATTCAGAGCACAACCTAACAAGCAATGAAGGGCACAGTCTGAAAAACCTG

Seq A exon

GTGAGATTGCCATCTGAGCCCTGGGGCAGGTCTGGGCGGTGGAGGAGCAAGGGTTGCGGTGCAGCCCTCTCCTGGTTTCTGAACCCCATCACCACTGCCTCCCCAG

Seq C2 exon

GAGCACCGCCTAAATGAGATGGAGAGAACTCAGGCTCAGCTGAGGGATGCTGTCCAGAGCCTGCAGCTTTCTCCAAGGACGCGGGGGTCTTGGAGTCAACCCCAGCCCCTCAAAGCACCCTGCCTCAATGGAGACACCACCTGAGCTGCCCATCCTGCCTCATCACACGTGGTCTGGGAGCAGAGAGATAGCCATCTTAGGGGGGGTGTCTGACTTTGCCTTAGCCCTACTTGGCCTACAGTGGGGAGTGGAGCTGCTGGTCCCAACCACTCTGGCAGTATGAAGTTGCCCAGTAAAATCTTGATTTCAGTG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000105122-RASAL3:NM_022904:17

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

Alternative protein isoforms

No structure available

Features

Disorder rate (Iupred):

C1=1.000 A=NA C2=0.979

Domain overlap (PFAM):

C1:

PF045827=Reo_sigmaC=FE(18.3=100),PF101864=Atg14=FE(17.5=100),PF123293=TMF_DNA_bd=PD(20.0=63.6),PF104824=CtIP_N=FE(20.2=100),PF154501=DUF4631=FE(18.6=100),PF082327=Striatin=FE(20.4=100),PF041569=IncA=FE(16.0=100),PF079267=TPR_MLP1_2=FE(19.8=100),PF045137=Baculo_PEP_C=FE(22.6=100)

A:

NA

C2:

PF045827=Reo_sigmaC=PD(22.6=54.2),PF101864=Atg14=PD(19.2=47.9),PF104824=CtIP_N=PD(21.2=45.8),PF154501=DUF4631=PD(21.2=50.0),PF082327=Striatin=PD(24.3=52.1),PF041569=IncA=PD(19.1=52.1),PF079267=TPR_MLP1_2=PD(31.1=68.8),PF045137=Baculo_PEP_C=PD(24.7=47.9)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSP00000341905