BtaINT0122638 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011602 | RASAL3
Description
Bos taurus RAS protein activator like 3 (RASAL3), mRNA. [Source:RefSeq mRNA;Acc:NM_001102236]
Coordinates
chr7:8710507-8713487:+
Coord C1 exon
chr7:8710507-8710841
Coord A exon
chr7:8710842-8713356
Coord C2 exon
chr7:8713357-8713487
Length
2515 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
GCACCGCCTCCTCTACCCAGAGC
3' ss Score
6.7
Exon sequences
Seq C1 exon
GAGAATCTCTGCCATGGACCCACCTTCACCAAGCCGGGCCTCCCAAACCCAGCCTGTAGCCCCATCTCCTTTAACCTCCTACCGCTGGCACTCAGGGGGTGGTGCGGAGAAGGGGGCTGGGGGGTTCCGCTGGGGCCGCCTTGCAGGATGGGGGAGGGCACAGAGCCACCAGGAGACCACGGCCAGCAGCCAGCCGGCCCCGCGCTCGCTGTTTCGTCGCGTCCTCTCTGCACCCCCCAAGGAGTCACGCACGAGCCGCCTGAAAATATCCAAGAGCCTCTGGGGGAAAAACAAGAGCCCACCGCTGGATTCAGAGCCGGAGCCAGAAAACCCAG
Seq A exon
GTACATGGCTCCCCCACCCAGGGCTGGGAGGCCCGGATGCAGGGAGGTTTTGTCTGCCTCCGGAGCATCAGCCTTACAGACACAGGAAGTTGTGGGGAGTGCAAAAGCCCAACAGGAAGTGGCTGGGGGCCCGGCTGGCTGCCCTCTTCCCTCTTTCCCCCTCACCCCAGGGGCCTGGGCATGGTGGGAGTGACTAGGAACCTATGAGCTGGGGGTCCATCCAGGGGAAGGGGCAGGGAACAGACTGATGGGGCAGCACTGTCCAGATGCCAAATGGCTCTTGGCCCTGGTAGGTCTCTCCTCATATTCAGTGGCCCAGGCGTCTTCTCTCCTGCCTGGATACCCATTTCTGCTGTCTCCTACTCTCCTGCCCTCCAGCCTCAATGTCTTAGTATCTCCTCTTCCTTGAGCTTCAGTTTCTCCACTGGTTAAAATGGAATCATGACTCCTATCCTGAAGCGTATATCATTCATTCATTTGGTCATTCAAACAGAGGTCTGTGAGCATTTACTATGTCCTAGGCCTGCCCTGACTTAGACACTGAGGACACAGCAGGAACAAAACAGAGGAAAGTGCCTGCCTACCTCATGGAGTTCATGGTGCAGTGAGTGTGACAGGCAGTAAACAAGTAAATGAGGAGATGACAGATGGGGCTAAGTGTCACACAGAGAGACCTAGAATTGCAAAGGGTACCATGAGGGTTGGAGCTCAGGAATGCCTGGGACTCAGCACATTTTATGTGATCATTAGCAAATGGAGTTATCGCTTATTCCCCTGGTGGTAAAACAGTAGGACAGATGGGTCCTCTGGGAGGGTTGATGCTGTCCTCCCATTTCTGAAAGCTCATTTAATTCTCATCACTCATATCCCCATTTTGCAGGGGTATCCCTTCAGCCCCCTCCAGGGTATCAGGTATTGCCCACTCCATAGCATCCAGTGAGAGCTCTCTGACAAGCCCCTGCCCCCCATTCTTCCCCTACTCAAACACCTCCCATGGCTCCTTAATACCTTCAAGATGAATCCCCATCTCCTCTAACTGACACCCAAGGCTTTGCCAATCTCTTCCTTAACCTTCCCCTCCAGCCTTTAAGCCCTCCAAGCCCTCCTCATGCCTCCCTTTATTTCTCTGGACCAGGCCACGTGCCAAATCCCAGCCTTTCCTCAAGCTGTGTGTGTGTGTGTGTGCTCTCAGTTGGTCAGTCATCTCCGAATCTCTGTTATCCTGTGGACTGTAACTCACCAGGCTCCTCTGTCCATGGGATTTTCCAGCAAGAATACTGGAGCAGGTTGCCATTTCCTACTCCAGGGCATCTTCTCAACCCAGGGATTGAAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAGGTTCTTTACCCCTGAGCCAGCTGAGAAACCCTGCTCACTCTGTTCATGCAACCATCTCCTCAATCTCTGTCAAATCAAATCTGCTGTTCAAGATCCAGTGCAGGGCATTCCTTGGTGGTCCAGTGGTTAAGGGGTTTCCCTAAGTAGCTCAGTGGTAAAGAATCTGCCTGCAATGCAGGAGACCTGAGTTCAGTCCCTTGGTCAGGGAGATACCCTGGAGGAGGGCACAGTAACCCACTGCAGTATTCTTGCCTGGAGAATTCCATGGACAGAGGAGCCTGGCGGGCTACAGTCCACAGGGTCACAAAAAGTCGGACACGACTTAGTGATTAAGCAGCAAATGGCAGCAGCCTTGGTAAAATGGGGGTTATAATAGCCCTTTGAATGGCTTTTGGAGGATTAAATGAGAGAAGGAATGCGGAGTAGTAAGTACAGTACCGGGCACATAGTCTGTGGGGCTGCATCCACTCCCCATTACTACCCAGGGCTACTGGAGACAAGGCCCAGAGAGGGGTAGAGGCTTGTCCCCACCTGATATGACTGCTGGGTGGGTTGGGAAGAGGAGGCACTTAGGAGGGAAGCCTTGATGAGCCTTGGTGAGTGGAAAGGTTGTCCTGAGGGAGAAGAAGGGACTCCCAGGCCCCCAGCACCGCCTCCTCTACCCAG
Seq C2 exon
AGCCTGAGCCGGAGCTGGAGCCCCTGGCCACACAGATCCCAGAGGCTCCCACCCCCGACGTGCCCGTCTGGAACATCGAAGCCTTCACACTACTTGATGGGAAGCTGGTGTTGCTTGGGAATGAAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011602:ENSBTAT00000015416:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0016924=PH=PU(13.3=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]