HsaINT0137725 @ hg38
Intron Retention
Gene
ENSG00000105122 | RASAL3
Description
RAS protein activator like 3 [Source:HGNC Symbol;Acc:HGNC:26129]
Coordinates
chr19:15461471-15464377:-
Coord C1 exon
chr19:15464031-15464377
Coord A exon
chr19:15461608-15464030
Coord C2 exon
chr19:15461471-15461607
Length
2423 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
GTGCCTCCTCTTCTTCCCAGAGC
3' ss Score
9.11
Exon sequences
Seq C1 exon
GAGACCCCCCCCCCCAACCATGGACCCACCGTCGCCAAGCCGGACCTCCCAAACCCAGCCCACAGCCACCTCTCCGCTGACTTCCTACCGCTGGCACACAGGGGGCGGTGGGGAGAAGGCGGCTGGAGGGTTCCGCTGGGGCCGCTTTGCTGGCTGGGGCAGGGCCCTGAGCCACCAGGAGCCCATGGTCAGCACCCAGCCAGCCCCTCGCTCGATATTCCGTCGGGTCCTATCTGCGCCTCCCAAGGAGTCACGGACCAGTCGCCTTCGACTCTCCAAGGCCCTCTGGGGGAGGCATAAGAACCCACCGCCGGAGCCAGACCCGGAGCCGGAGCAGGAGGCCCCAG
Seq A exon
GTACATGGTTCCCCCACCCTGAGCTTGGGCCGGGCTGGGAAGCCGGATGCTTGGGTTTTGTCTGCCTCCGGAGCATCAACCATACAGACACAGGAAGTTGTGGGGAGTGCAAAAGCCCAGCAGGAAGCCGCTGGGGCCCAGCTACCCTGTTCCCTCTTTCCCCCTAAAGAGGGTAGGAGGAGTTGCCGGGGTCCTGTGGGCAGAGGGTCCATCTGAGGAAGGAACAGTGAATGTAAACCCGTGATAGTATTGTCCAGAGGCTAAACGGCTCTTGGCCCCAACGGGTCTCTCCTTCAATGGCTCAGGCCCATCCTTTCCTACCTGGATATCCATCTTCAGCCTGCCTCCTACTCTCCTACCTTCTAGCTTCCGTGTCTTTGTTCTGAGCCCTTAAGCCTCAGCCTCTCCATCAGTTCAGTGAGAATAATGATCTCCATTTTGGAGAGTATATAATTTTATTTGCTCATATTCATTCATTTATTCAAGCAGAGGTTTGTTGAGCTTCTATTGTATGTGCCAGGCCCTGATTTAGGCACTGAGGACACACTAGTGAAAGAGACAGATGACCCTCCCTGCCCCATGGAGCTCACAGTGTAGTGGAATTGACAGGAAATCCATCAACAAGAAAATGACAGATGGGCCAGGCATGATGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGTGGATCACCTGAGCTCAGGAGTTCGAGACCAGCCTGGCCAACATGGCAAAACCCTGTTTCTACTAAAAATACAAAAAAAAAAAAGTATCTAGGCATGGTGGCACATACCTGTACTCCCAGCTACTCAGGAGGCTGAGGCAGGATAATCGCTTGAACCCGGGAGGTGGAGGTTGCAGTGAGCTGAGATTGCACTACTGCACTCCCGCCTGGGCGACAGAGGGAGACTCCATCTCAATGGAAGAAAAAAAAAAAAAAGAAAGAAAAAAAATGACAGATGGTGCTAAGTGTCACACAGGGGGATCTAGAAGAGTAATGGATATCACAAGAATTAGGGCTCAGGAATGTAACACTAGCCTAGGGCCCAGCATTTTTTTTATTTTTTTTTTGAGATGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACCGCAAGCTCCGCCTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCTGAGCAGCTGGGACTACAGGAACCCGCCACCATGCCCAGCTAATTGTTGTATTTCTAGTAGAGACAGGGTTTCACTGTGTTAACCAGAATGGTCTCGATCTCCTGACCTCATGATCCGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCCAGGCCCAACATATTTTAAGTGATCCGTTAATAAGCGGGAGTTATCATTTATTGCTCCTGGTGGTAAAAACAAGGGAACAGACAGGCAATCTGGGAGGGCTAATTCAGCCCTCCTATTTCCTGGAAGCTCATTTAATTCTCACTGCTTATATTCCCATTTTGTTTTTGTTTTTGTTTTTGTTTTGAGACACAGTCTCACTTCCTTGCCCAGGCTGGAGTGCAGTGGCGGAATCTCAGCTCACTGCAACCTCTGCCTCCCAAGTTCAAGAGATTCTCCTGCCTCAGCCTCCTGAGTAACTGGGATTACAGGCATGTGCCACCACGCCTGGCTAATTTTGTATTTTTAGTAGAGACGGGGTTTCTCCATGTTGGTCAGGCTGGTTTTGAACTCCCAGCCTCAGATGATCCACCCGCCTAGGCCTCCCAAAGTGCTAGGATTACAGGTGTGAGCCACAGAGCCCAGGCACATCAGGCTATTTTTTAAAGACAGGGTCTTGTTATGTTGCCCAGGCTGGTCTCAAACTCCTGGTCTCAAGCAATCTGCCCCACCTCGGCCTCCCAAATGTTGGGATTACAGGCATGAGCCACCTTGCCCAGCCCCTGTCCTGTTTTTTAACCTCTTGGACCCACATAATGTCTTGGTTAAGAGAAGAATGCAAAAAAAACAAAAAAACAAAAAAAGAGAGAGAGAGAAGAATGCTTGTGACTGAAGCCCAGCCCAACCACTCACAAACTGTGTGACCCTGAGCAAGTCACTCAACCTCTCTGAGCCTGTTATCATAGCCCTTTGAATGGCTTTTGGAGGATTCAATGCAAGAAGGTGTGTGGAGTGGTATACAGGGTACTGGGCACATGGTAGGTGAGTTGTGTCTGCTACCCATGGTTAGTGGGGACAAGGCCCAGACAGCGATGAAAGCTTGCCCAAGGTCATACAGTCTGATACGGCTGCTGGGGTGGGGGGCACCTAGGAGGGAACCCACCATGAGCCTTCGGGAATGGAAAGGGTAGCCTGAGGGAGAGAAAACGTCTCTTAAGTCCCCCAGTGCCTCCTCTTCTTCCCAG
Seq C2 exon
AGCTGGAGCCGGAGCCAGAGCTGGAGCCCCCTACCCCACAGATCCCTGAGGCCCCCACACCCAACGTGCCTGTCTGGGACATTGGGGGCTTCACCCTGCTTGATGGGAAGCTGGTGCTGCTTGGAGGAGAGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105122:ENST00000343625:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.982 A=NA C2=0.826
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development