RnoINT0124520 @ rn6
Intron Retention
Gene
ENSRNOG00000006167 | Rasal3
Description
RAS protein activator like 3 [Source:RGD Symbol;Acc:1309019]
Coordinates
chr7:14414908-14418776:-
Coord C1 exon
chr7:14418448-14418776
Coord A exon
chr7:14415048-14418447
Coord C2 exon
chr7:14414908-14415047
Length
3400 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
CCCATCCCCCCTCTTCCCAGAGC
3' ss Score
9.61
Exon sequences
Seq C1 exon
CAGAGACTCCGCCATGGACCCACCGCTGCAGAATGAAGATTCCCAAACGCAGCCCTCGCCGCTGACGTCCTATCGTTGGCACACTGGAGGCAGAGGGGAGAAGATTGCTGGAGGGTTCCGCTGGGGCCGCTTCGCAGGCTGGGGAAGGGCCCTGAGCCATCAGGAGCCCATGGTGAGCAGCCAGCCAGCCCCTAGATCTCTGTTTCGTCGGGTCCTCTCTGCACCTCCTAAGGAGTCACGACCCAATCGCCTCCGGTTTTCCAAGAGCCTGTGGGGGAGGCACAAGAACGTGGTACCGCTGGAACCCAAGCTAAATCCGAAGGCCCCAG
Seq A exon
GTACATTCTCCCCCCAACCCAGCTGGGGCTAGGCTTGGGTGGCCGGATGCCTGGGTGTTTGTCTGTCAATCTAGCATCAGCCCTCTAGACACAGGAAGTTGTGGGGAGTATGAAAGCCCAGCAGGAAGTGGCTGGGGCCCCTAGCAGCCTCATCTCTTTCCCCTTAAACTGGGGCAAGGAAGACTCGCAGGACCCGTACGCAGCTGAGGTCCCGATGAGAAAGGGGCATTGAATGGATGCACCTTAGTACTCTGTGGATGTCTAATGGTTCTTGGCCCCGAAGGTTGCTGTCTTCTGTATCCTGAAGACCAAGCCACTGACGGTGTGAATTTCAGTTGCCTTATATATAGCCCACCTCTTTCTTTGTTTCCTTGAATGTGAAATTCCCCATCTGTGCCTTAAAGACATCCATCCATCCATCCATCCATTCATTTGTTCATCCATTCATTCATTCAAGCAGGTGTTATTCATTCAGTGTGTATGTGTGTGTATATGTGTGTGTGTGTGTTTGTGTGTCCTTTACCACAACACATGTGTTGAAATCACAGGACAGCCTGCATTTATTTATTATATTGGGGAGGGGGCAAGCAAGCCATGGTTCCAGGGAGGGAGTCAAAGGACAACTTTCAGGAGTCAGTTTTCTGCTCCAATCATGTGGGGCCTGGGGAATCAAAGTCAGACAGTTAGCCTTGGTGGCAAGCACCTTTACTTTCTGAGCCATCTTGCTGGCCCAAGCAGAAGTTTTTTGAGCATCAAATTGGTTCCGCCCTGACCCCGACTGACCCCGACTGAAGCACGAAGGACAGCTGTGAGCAGAGCAGAGGACACTGCCTGGCCTGTGGAGCTCACACTGTAGTATGTGGGGGAGGAACAGTTACAGACAGAAAAATGAAGTCAATATGAAGACGGCAGATGCTGCAAAATGAGACCTGGGAGACTGGTGGAGACTAGGAAGATTAGAGACCAGGGCCTAGCACGTGCTAAGGGATCCACTAGGTGGAAAGAGTTAGAGCCCCCATGTGGCTCGGCTGGGTGGTAGAGCACTTGTTAACATGGGAGAGGCTGTGGGATTGCGGGCTTTATACCCACCACCAAGAAAGAAAGCGAAGGTGTCTGCATCACCCCTAGTGGTAAGACAGGGTAGAAAATAAACTGAGAAGATTGGTTCAGCAGGCGTTTCCTGGAAGCTCAAGGTTAATTCAGCTCTTTCCTAGAAATTCTCGAGATGCCTTCCACTCATTTCAGAGCTAGGACTACTAAAACTCCCAGCACTTGGAAGGCAGGGGCGGGAGGATGATCGGTCGTGAGTTCTAGGCCAGCCTAAGCCATATAAGAAGCCTTCATCTCAAAGCAAATGAGGCTGTGGTATTGTGACTGGCAGGTAAACACTCTTGGTGGTAAACCTGAAGCCCCACATGGTCAAGGGGAGACCGACTCCTAACGCTGTCCTTTGACCTTCACTTGAACCCACGAAAATAAATAAATGAATTCGAGTTGTTCTCGGGCCTCCACTTGTGCCATGGCAAATGTGTGCGTGCGAGCTCAAACTAAATAAAAAGCAACTCAGCACTAATATTATATTTAGAAAACGGGGTCTTACTACATAGACCTGGCTGGCCTCAGACTCACAGATCTGCCTGTCTCTGCCTCCTGTTTACTGGAATTAAAGGTGTGTATCACCATGCCCAACTATTTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTCCCTGTGGCTCAACCGAAATGCGAACGCACGAACTCGAGCGAGCCCTAAAGAAAAAAAGGGCACTGCGCCCTTTACCTCAATACCTCTTATTATACACGCGGAAGTCGCCGGATAGATAACCACAGGATGATAGTCGCAGTTGGCCTCCCCACTCTCTTTCTTTCTCTTCTACTGGGCTAAGCTCCCAGCCCTGCAGAAGTAGTCTCCAAGGCCCTATAGAGTGTCAGGGGTTGCCCACAACATAGGCTCCAGACAGTGGTTTCTACCAGGCAAGCCTGCCCCTTCTTAGCTCAGCTCCTCCCACCATGGGGATTGGGGTAGCCCATTGGTGGAGGGTATGCTTAGTATGAGCCAATCCTGGGACTCAGTCCCTAGCACCAAAGACAAACAAGCCCCAGTTCCTAATTAGTCGCACAGACTTCAGCCCAGCCTTCCTTGCCCTTCTCTATCTCCCTGGGATTTCCCAATCTGCCAGCCTTTGTTCAGCGTCTCCACATACCTTCTCTTCCACCTTGGCCGGGTGAAGTTCAAACTTCCTGTCAGAACCAAGTGCGAATGTGCTCTGTCAGGGTGAGGAGTAGAGTCCTCCCTGGCCCGCTTTCCATTAACACCACCTCCCCAAGGGAGAACACTCCCACGTACATACAACTTTTTCTACACCATTCTCTCTTATTTTTTAAATATTACCGTTCTCAAATGGATCCTCTCCACCCTAAGTAAATTATTTTAGTGTGCGCGCGCACGCACGTGCACACATAGCATGGAGAAGTCAGTGGACAGCACGGTAGAGTTTGTTCTCTCCTTCCACATTTAGGCTGGGGCCTTTACCTGTTGAACCACCTTGCTGGTCCCAGATTAGTTATCTATGTAAGAGGCCAAGGCTGGTATATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATCTTCCTCCTAGTTTAGTGTGTCAGGTACTGGTTTTGCAGGCGTGTGCTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTATCTTCCTCCTAGTTTAGTGTGTCAGGTACTGGTTTTGCAGGCGTGTGCTACTAGGCCCAACTTTGCCCACTCTCTTGGTTAAGAGATGAATGCTTGGATTAAAAGCCTGTCTTTTTAAAAAAAACAAAACAAAACATTTATTCTATATAAGTACACTGTCGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAGGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCTAGAAGCCTGTTGTAATCACATCCTCACAAGCTGTGTGATTCTGGGTAGGCCATTCAACCTCTGTGGGCCTCGGTTCTAATGCCCTTTAAGTGGCTTTTGAAGATTGAGCAAGAAAACACAGTAGAACTGGACAGGGAGCCAGTGGGCTGTGTCCTCTTCTAGGGTTGTGGAGAACAGTTCCCAGAGAGGTAGCGGACGACCAGCCTGACATGATTGCTGAAGTGTGCACCTTTGCTGCATGAAGAGGGGGTCCAAGGGCGACGGGGAGACTCTGAAATCCCCATCCCCCCTCTTCCCAG
Seq C2 exon
AGCCAGAGCTGGAGTTGGAGGGAGCCCCAGACCTGCGCGCTGCACATATCCCTGAGCCTCCCGCCCCTGACATGCCTGTTTGGAACATTGATGGCTTTGCCCTGCTCGAAGGAAGACTGGTGATGCTCGGTGAGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006167:ENSRNOT00000066722:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.689 A=NA C2=0.660
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]