MmuINT1029550 @ mm10
Intron Retention
Gene
ENSMUSG00000052142 | Rasal3
Description
RAS protein activator like 3 [Source:MGI Symbol;Acc:MGI:2444128]
Coordinates
chr17:32399290-32403583:-
Coord C1 exon
chr17:32403056-32403583
Coord A exon
chr17:32399430-32403055
Coord C2 exon
chr17:32399290-32399429
Length
3626 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGC
5' ss Score
10.12
3' ss Seq
GCATCTCCTCTTCTTCCCAGAGC
3' ss Score
7.59
Exon sequences
Seq C1 exon
CTGAGGAAGGAAGCTAGGCACAGTACAGACGGCTGCTGGTTCTGGACTGGCCAGGAAATCAAGGTAAGGGAGGGTGTACGTGTGGCATCCTCAAGTATGTTCCTGGAGGCGAAGCTGAGAAGAGACCAGGGAAGATGAAGCCAGAATGTGGGCAGACAATGTTCAGAACCTTTTGGTCTCGCAGCAGAGACTCCTCCGCCATGGACCCACCGTTGCAGAGTGAAGAAGATTCCCAAACGCAGCCCTCGCTGCCCTCTCCGCTGACATCCTACCGCTGGCACACTGGAGGCAGTGGGGAAAAGGCTGCTGGAGGGTTCCGCTGGGGCCGCTTTGCAGGCTGGGGAAGGGCCCTGAGCCATCAGGAGCCCATGGTGAACAGCCAGCCAGCCCCCAGATCTCTGTTTCGTCGGGTCCTCTCTGCACCCCCTAAGGAGTCACGGTCCAATCGCCTCCGGTTTTCCAAGACCCTGTGGGGAAGGCACAAGAACGTGGCACCACTGGAACCCAAGCCAAATCCGAAGGCCCCAG
Seq A exon
GTACGCTCTCCCCCAATCCAGCTGGGGCTAGGCTGGGTGGCCGGAAGCCTGGGTGTTTGTCTGTCAATCTAGCATCAGCCCTCTAGACACAGGAAGTTGTGGGGAGTATGAAAGCCCAGCAGGAAGCGGCTGGGGCCCCTAGCAGCGCTCATCTCTCTTTCCCCCTAAACTGGGGCGAGGAAGACTGGCAGGACCCGTAGGCAGCTGGGGTTCAGCTGAGAAAGGAGCATTGAATGGATGCATGCACCTTAGTACTGTGAGGATGTCTAATTGTTCTTGGCACTGACGGTTGTTGTCTTCGGTATCCAGTAGACCAAGCCGTTGGCTACATGTGGATTTGAGCTGCCATATATACATAGCCTATGTCTTACTTTGTTTCCTTGAATGTGAAATTCCCCTTCTCTGCCTTAAAGACAACATTCATTCATTCATTCATTCATTCATTCAAGCAGATGTTCATTCAGTGTGTGTGTGTGTGTGTGTGTGTGTCCTTTATCACAACACGTGTTGAGGTCAGAGGACAACCTGCATTTATTTATTTATATTAGAAAGGAGCAAGCAAGCCATGGTTCCTGGAGTCAAAGGACAACTTTCAGGAGTCAGTTCTCTCCTTCAATTACGTGAGTCCTGGGGATCAAACTCAGACAGCCTTGGAGGCAAGCACCTTTATTTGCTGAGCCATCTTGCTGGGCCAAGCAGAAGTTTTTTGAGCATCGAATTGGTCCCTGAGTGAAGCACTAAGGAGAGATGTCAGCAAAGCAGATGACACTCCCTGCCCTGTGGAGTTCACGTTGTAGTGGGTGGGGGAGGAACAGTTACAAACCTGCTGCAAAATGAGAACTGGGAGACTAGTGGACACTAGGAAGATTAGAGACCAGGGCCTAGCATATACTAAGAGATCCAATTGTAGGAAAGAGTTAGGGCCTCGGATGTGGCTCGGTGATAGAGCACTTGCTTAACATGGGAGGGGTTGTGGGATTGTGGGTTTTACACCCACCACCAAGAAAAAAAGAAGAGTTGTATGTATCACCTCTAGTGGTAAAATCGGGTTGAAAATACACCTAAAAGGTTGGTTCCGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCTCTGACTGCTCTTCTGAAGGTCATGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAATGAGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGTTACAGTGTACTTACATATAATAAATAAATAAATCTTTAAAAAAAAGAAAGATTGGTTGAGCTGGCGTTTGCTGGAAGCTCATGGTTAGTTCAGCTCTTTTCCTGGAAAGTTTTGAAATGCCTTCCATTCATCAGGGTTAGGACTACTAAAATCCCAGCACTTGGAAGGCAGGAGCAGGAAGATGATCAGTCTTGAGTTCTAGGCCTGCGTAAGCCATGTAACAAGGCTTTATCTCAAAACAACTGAGGCTCTGGCGAGGTGACCGGCAAGTCAAAGCACCTGGTGGAAACCCTGAGCCCACATGGCCAAGGAGAGACTGACACCTAAGTGTTGCCCTTCCCCTTCCTGAACCCACACAAATAAATCAATAAAGTCAAGCTGTTCTCCGGCCTCCACTTGTGCCATGGCAAATGTGTGTGCACAAGCACAAACTAAATAAATGTCATAGAAACAGCTCAGCCTTCATGTTATATTTAGAAAAGTGGTTTCATATTATGGGGATTTTTTTTTCCAAGATAGGCTCTTGCTGCATAGACCTGGCTGTCCTCAGACTCACAGATCTGCCTGTCCCTGTCTCCTGTTTGTGGGGATTAAAGGTGTGCACCACCAGGCCCAATTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTCTTCCTTCCTTCCTTCCTTCTTTCCTTCCTTCCTTCTTCCTTTCTTTTTTTCCAGTTTAGGGACTCACACACAAAAGGCAAGTGCTCTACTACTGGGCTAAGCGCCCAGCCCTGCAGCAGTATTCTGAGGCCCTGTAAAGTGCCAGAGCTGGCCCACTACACAGGCTCCAGACAGTGCTTTCTACCAAACAAGCATGTTCCTTCCTAGCTCAGCATCTCCCACTACTCCCACAGCGGGGATTGGGGTAGTCCACTGGTGGAGGGTATGCTTAGTACAAGCCGAGCCCGGGGCTCAGTCCCCAGCACCATAGATCCTAACTGACTGCAGACACTTCCGTCCAGCCTTTACTGCCCTTCCCTTGATTTGTTCATCTGCCAGCCTTTGTTCAGAGACACCATATACTTTCCCTTCCATCTTGGCTGGGTGAAATTCAAACTTCAGTTCAGAACCTAGTGCAAATGTCAGGGGGAGGAGTAGAGTCCCCCCTGAGCCACTCTCCACCAACACCACCTCCCCAAGAAGGAAAACTCCATGGACTTACAACTTTGTCTATACCATTCTCAAATTCTCAAATAAATCCTTTCCACCTTAAGGAAATTATTTTAGAGAGAGACAGACAGAGGGAGAGAGAGACAGAGAGAGAGACAGAGACAGAGAGAGACAGAGACAGAGAGAGACAGAGACAGAGAGAGACAGAGAGAGAGACAGAGAGAGACAGAGAGAGACAGAGAGAGACAGAGACAGAGAGAGAGAACACAGCATGGAGACGTCAGAGGATAGCACTGTAGAATATGTTCTCTTCTTCCACCCTTATGTGGGCTCCAGGAGTTGAATTCACACCAGGCTTGCATGCCTGGTACCTTTACCTATTGAACCTTGCTGGTCCCACACTAGTTATCTATGTAAGAGACCAAGGCTTGTTCGTATCCCTTCATTCTATCTATCTATCATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTACCTAACTACCTATCTCTCCCTTTCTTTCTCCTTCCTTCCCTCCTCTCCCTCCCTTTTCCTCCTCTTCCTCCTCCTCCCCCTCTTCCTCCTCTCCATCCCTTCTTGTTTTTGGAATAATGTCTCAAATTAGTAGCCCAAACTGGCCTGAAACTCATCCTCCTTCAGTTCAGTGTGTCAGGTACTGGCATTACAGGTGTGTGCTACTAGGCCTACCTTTGCCCAGTATCTTGGTTAAGAGAAGAATGCTTGTGTTAGAAGCCTGGCTTAATCACACACTCACAAGTTGTGTGATTCTGAATAGGCCACTCTACTTTTTTGGGCCTCAGTTCTAATGCCCTTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTGTTTTGTTTCTCTGTGTAGCCCTGGTTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATTCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAATCTAATGCCCTTTAAATGGCTTTTGAAGATTAAGTGAGAAAAGGCATGAAGAGCAATAACCGTAGTACTGGACAGAGAGCTGACAGGCAGTGTCCACTTCTAGGGTTGTTGAGAACAAACCCCAGAGAGGGTAGATATCTACCCAAGGGCACGCAGACTGACATGGTTGCTGACGTGTGCACCTTCATGTATGAAGAAGGGGGTTAGAGGGAGAAGAGGAGACTCTGAAATCAGCATCTCCTCTTCTTCCCAG
Seq C2 exon
AGCCAGAGCTGGAGTTGGTAGCAGACCCAGATCTACCCGTTGCACAGATCCCTGAGCCTCCCACCCCGGACATGCCTGTTTGGAACATTGATGGCTTTACCCTTCTCGAAGGAAAGCTGGTGATGCTCGGTGAGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052142:ENSMUST00000063824:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.742 A=NA C2=0.634
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types